Gvermi12913.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12913.t1
Unique NameGvermi12913.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2070799..2071356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog515635.Dtur_1516
Preferred namegcvH
PFAMsGCV_H
Max annot lvl2|Bacteria
KEGG rclassRC00022,RC02834
KEGG koko:K02437
KEGG ReactionR01221
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Evalue1.31e-45
EggNOG OGsCOG0509@1|root,COG0509@2|Bacteria
Descriptionglycine decarboxylation via glycine cleavage system
COG categoryE
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12913Gvermi12913Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2070799..2071356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1Gvermi12913.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2070799..2071356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1.stop1Gvermi12913.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2070799..2070801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1.CDS1Gvermi12913.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2070799..2071178 -
Gvermi12913.t1.CDS2Gvermi12913.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2071263..2071356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1.exon1Gvermi12913.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2070799..2071178 -
Gvermi12913.t1.exon2Gvermi12913.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2071263..2071356 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1.intron1Gvermi12913.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2071179..2071262 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1.start1Gvermi12913.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2071354..2071356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=158bp
MATILRALPLRRVAKTAPSFARPALARAFSSYPSDRKYKSSHEWAKLEGD
VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSP
LNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYE
KTIAEEE*
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spliced messenger RNA

>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_425:2070799..2071356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCATCCTCCGTGCGCTCCCCTTGCGTCGCGTGGCAAAGACGGC
ACCCTCCTTCGCCCGTCCAGCGCTGGCTCGCGCTTTCTCTTCTTATCCTA
GCGATCGTAAGTACAAATCTTCTCACGAATGGGCCAAATTGGAGGGTGAT
GTGGCCACGGTCGGTATCACCGATCACGCACAGGCTGCCCTCGGAGATAT
TGTCTTCGCTGATTTGCCGGACATTGAAACTGAGGCCGTATCGGGTGAGC
GCGCTGCTACTGTCGAATCCGTCAAAGCGGCTGCTGATATCTACTCGCCT
CTGAATGGCGAGATTGTGGGCGTCAACTCCGTTCTGAAAGACACCCCAGA
TGTTATCAACTCAAGTCCTCATGACGAGGGATGGATCTTCCAGGTCAAGG
TCTCGGATCCCGCGGAGATCGAGGGGCTCATGAGTGCAGAGGAATATGAG
AAGACCATTGCTGAGGAAGAGTAG
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protein sequence of Gvermi12913.t1

>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=158bp
MATILRALPLRRVAKTAPSFARPALARAFSSYPSDRKYKSSHEWAKLEGD
VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSP
LNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYE
KTIAEEE*
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mRNA from alignment at ScGOVlb_425:2070799..2071356-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_425:2070799..2071356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCATCCTCCGTGCGCTCCCCTTGCGTCGCGTGGCAAAGACGGC
ACCCTCCTTCGCCCGTCCAGCGCTGGCTCGCGCTTTCTCTTCTTGTAAGT
TCGAATCGCGTTCCCCCCTCCCCCTCTCTGAGTTCGTCCATAGTCTCGGC
TAACAATCTCTCCACACCCGGCGTGAAGATCCTAGCGATCGTAAGTACAA
ATCTTCTCACGAATGGGCCAAATTGGAGGGTGATGTGGCCACGGTCGGTA
TCACCGATCACGCACAGGCTGCCCTCGGAGATATTGTCTTCGCTGATTTG
CCGGACATTGAAACTGAGGCCGTATCGGGTGAGCGCGCTGCTACTGTCGA
ATCCGTCAAAGCGGCTGCTGATATCTACTCGCCTCTGAATGGCGAGATTG
TGGGCGTCAACTCCGTTCTGAAAGACACCCCAGATGTTATCAACTCAAGT
CCTCATGACGAGGGATGGATCTTCCAGGTCAAGGTCTCGGATCCCGCGGA
GATCGAGGGGCTCATGAGTGCAGAGGAATATGAGAAGACCATTGCTGAGG
AAGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2070799..2071356-

>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=474bp|location=Sequence derived from alignment at ScGOVlb_425:2070799..2071356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCATCCTCCGTGCGCTCCCCTTGCGTCGCGTGGCAAAGACGGC
ACCCTCCTTCGCCCGTCCAGCGCTGGCTCGCGCTTTCTCTTCTTATCCTA
GCGATCGTAAGTACAAATCTTCTCACGAATGGGCCAAATTGGAGGGTGAT
GTGGCCACGGTCGGTATCACCGATCACGCACAGGCTGCCCTCGGAGATAT
TGTCTTCGCTGATTTGCCGGACATTGAAACTGAGGCCGTATCGGGTGAGC
GCGCTGCTACTGTCGAATCCGTCAAAGCGGCTGCTGATATCTACTCGCCT
CTGAATGGCGAGATTGTGGGCGTCAACTCCGTTCTGAAAGACACCCCAGA
TGTTATCAACTCAAGTCCTCATGACGAGGGATGGATCTTCCAGGTCAAGG
TCTCGGATCCCGCGGAGATCGAGGGGCTCATGAGTGCAGAGGAATATGAG
AAGACCATTGCTGAGGAAGAGTAG
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