Gvermi12653.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12653.t1
Unique NameGvermi12653.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:84392..85886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12653Gvermi12653Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 84392..85886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1Gvermi12653.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 84392..85886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1.start1Gvermi12653.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 84392..84394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1.CDS1Gvermi12653.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 84392..85009 +
Gvermi12653.t1.CDS2Gvermi12653.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 85680..85886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1.exon1Gvermi12653.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 84392..85009 +
Gvermi12653.t1.exon2Gvermi12653.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 85680..85886 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1.intron1Gvermi12653.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 85010..85679 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12653.t1.stop1Gvermi12653.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 85884..85886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12653.t1 ID=Gvermi12653.t1|Name=Gvermi12653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp
MADGPNPSRSSSGQASQSLPVQQLAAEIHGSSTGSLSPLSAAVSTRTSVT
LPQHSVHPVSPPPTAMSDERPSLGPLAKIPLRPSLRPVLQLDLDAVAEQL
SIFQGAAVTQEDLRNSFPIAKKQPQSPLQPSSVPKSFASVYPSGTETPVI
PLSVEVAGVNDDREGQNLVLQFETVEEALGLSDSPDSPNEMGDKVDASKG
WAVSVPYLPSVVVSSVQSMIPVVGTTMAVLMGTEHVPDVWTTLGGSVLLC
GVLVIADATKRSEVTVVLNEHLTS*
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spliced messenger RNA

>Gvermi12653.t1 ID=Gvermi12653.t1|Name=Gvermi12653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:84392..85886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGGGCCTAACCCCAGCAGATCGTCATCAGGTCAAGCTTCACA
ATCTCTGCCGGTGCAGCAGCTTGCTGCAGAGATCCATGGATCTTCTACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTCGACCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCCCGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTTTGCGACCAGTTCTCCAACTTGACTTGGACGCCGTTGCTGAACAGCTC
AGTATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATTGCAAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCGTTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTTATC
CCTCTGTCCGTGGAAGTGGCTGGTGTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCAGTTTGAAACAGTGGAAGAGGCTCTCGGATTGTCTGACA
GCCCAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGTACCTTCCAAGTGTGGTGGTAAGCAGCGTGCA
GTCAATGATTCCTGTGGTGGGTACCACCATGGCAGTTCTGATGGGAACCG
AACACGTTCCGGATGTATGGACCACGCTAGGTGGCTCAGTGCTTCTGTGT
GGTGTGTTGGTGATTGCAGACGCAACCAAGCGAAGTGAGGTGACTGTTGT
CCTCAACGAACATCTGACATCATGA
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protein sequence of Gvermi12653.t1

>Gvermi12653.t1 ID=Gvermi12653.t1|Name=Gvermi12653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
MADGPNPSRSSSGQASQSLPVQQLAAEIHGSSTGSLSPLSAAVSTRTSVT
LPQHSVHPVSPPPTAMSDERPSLGPLAKIPLRPSLRPVLQLDLDAVAEQL
SIFQGAAVTQEDLRNSFPIAKKQPQSPLQPSSVPKSFASVYPSGTETPVI
PLSVEVAGVNDDREGQNLVLQFETVEEALGLSDSPDSPNEMGDKVDASKG
WAVSVPYLPSVVVSSVQSMIPVVGTTMAVLMGTEHVPDVWTTLGGSVLLC
GVLVIADATKRSEVTVVLNEHLTS*
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mRNA from alignment at ScGOVlb_425:84392..85886+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12653.t1 ID=Gvermi12653.t1|Name=Gvermi12653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1495bp|location=Sequence derived from alignment at ScGOVlb_425:84392..85886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGGGCCTAACCCCAGCAGATCGTCATCAGGTCAAGCTTCACA
ATCTCTGCCGGTGCAGCAGCTTGCTGCAGAGATCCATGGATCTTCTACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTCGACCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCCCGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTTTGCGACCAGTTCTCCAACTTGACTTGGACGCCGTTGCTGAACAGCTC
AGTATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATTGCAAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCGTTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTTATC
CCTCTGTCCGTGGAAGTGGCTGGTGTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCAGTTTGAAACAGTGGAAGAGGCTCTCGGATTGTCTGACA
GCCCAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGGTGAGTGAACCCTTTGAACCACCGCTGCAAac
atggccaactgagcccgccgaaatcatggatgaggaaacgtcgttattgg
aacatgaaccccagggggtcgacttggcaaagcacggcgacatggttttc
caaccagatacaattgctgttgtgcaacggcaaggaaatgagaacgattt
cgaggatcaaagggttatcgtgtctgtgcctgagaccacgagcaacggag
tcaattctgggtttatcattccgaactatgactccaatgaaaatctgacc
gagctTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGATTTTATCGCGGCACTAAGTTCACTTGGAGCCATTGTATA
TCTTGACTCATGCAAAGAACTCCGGGGACGCGTCTCTTTCTTTCCTATGA
TGACATTTATATCAGCCCTGAGCTCGATCACGTTCGCTATTTCATCAATG
ATACTCTCTGGAACAAACTTGTCGGTAACAGATCATGGAGTCTTTGGGTG
GCTGCAGACGGATCGACATATTCTTGGTTTGTATCTCGGTTGCGTGGTTG
GCTTCTTAGGTACTGTGAGCTGCATTGCATCTTTGAAGTACCTTCCAAGT
GTGGTGGTAAGCAGCGTGCAGTCAATGATTCCTGTGGTGGGTACCACCAT
GGCAGTTCTGATGGGAACCGAACACGTTCCGGATGTATGGACCACGCTAG
GTGGCTCAGTGCTTCTGTGTGGTGTGTTGGTGATTGCAGACGCAACCAAG
CGAAGTGAGGTGACTGTTGTCCTCAACGAACATCTGACATCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:84392..85886+

>Gvermi12653.t1 ID=Gvermi12653.t1|Name=Gvermi12653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:84392..85886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGGGCCTAACCCCAGCAGATCGTCATCAGGTCAAGCTTCACA
ATCTCTGCCGGTGCAGCAGCTTGCTGCAGAGATCCATGGATCTTCTACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTCGACCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCCCGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTTTGCGACCAGTTCTCCAACTTGACTTGGACGCCGTTGCTGAACAGCTC
AGTATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATTGCAAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCGTTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTTATC
CCTCTGTCCGTGGAAGTGGCTGGTGTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCAGTTTGAAACAGTGGAAGAGGCTCTCGGATTGTCTGACA
GCCCAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGTACCTTCCAAGTGTGGTGGTAAGCAGCGTGCA
GTCAATGATTCCTGTGGTGGGTACCACCATGGCAGTTCTGATGGGAACCG
AACACGTTCCGGATGTATGGACCACGCTAGGTGGCTCAGTGCTTCTGTGT
GGTGTGTTGGTGATTGCAGACGCAACCAAGCGAAGTGAGGTGACTGTTGT
CCTCAACGAACATCTGACATCATGA
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