Gvermi12765.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12765.t1
Unique NameGvermi12765.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1425629..1427074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28042.GU90_11735
PFAMsMFS_1
Max annot lvl201174|Actinobacteria
KEGG koko:K08177
KEGG TC2.A.1.11
Evalue5.78e-06
EggNOG OGsCOG2223@1|root,COG2223@2|Bacteria,2I2RR@201174|Actinobacteria,4DZGQ@85010|Pseudonocardiales
DescriptionMajor Facilitator Superfamily
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12765Gvermi12765Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1425629..1427074 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12765.t1.stop1Gvermi12765.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1425629..1425631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12765.t1.CDS1Gvermi12765.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1425629..1427074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12765.t1.exon1Gvermi12765.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1425629..1427074 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12765.t1.start1Gvermi12765.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1427072..1427074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12765.t1Gvermi12765.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1425629..1427074 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12765.t1 ID=Gvermi12765.t1|Name=Gvermi12765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=482bp
MRLSHWRWLGPVPAAFVLQAVFGLQFANGVFASFVADPVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHSLPRAVAVLGSLAVAAQVLVSYGLLNGS
RAVVYAASILQGTGAGCIYVVSIVVVQDWVPESPALATGLSLLFGGAGSL
FGIYAFQALVHAMGDALPAMAVASLGAGLVSVTASMFIERPPDRWCPVAE
IFDPLTTMTLKDAHSARGAKRVDEQSICYSAIVDFGDDDVCHHKQNKSEC
GSARLSCYDIVVDPAFALVFVCVFVAAGPGYGFVLSYPLMLHSLFHMPLV
DANQMLCYATFFGVVGRLALGVAIDTLSSKCSADEGAAASIRGSKTTNCF
ILLLQTAALALMPAAIRWHSAWLFHAAVFGVFVAFNGGAVVSACLARDVF
APDNSTLAFALLGVAVGVARALFSVVLAACADGSGVGAYDWYIGWSVVVS
VAGAAASFAIEPAKCVNLGAASNRVFADAQV*
back to top

spliced messenger RNA

>Gvermi12765.t1 ID=Gvermi12765.t1|Name=Gvermi12765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1425629..1427074- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTTCGCACTGGCGGTGGCTCGGTCCTGTTCCGGCTGCGTTCGT
GCTGCAGGCCGTGTTCGGCCTGCAGTTTGCCAACGGCGTGTTCGCCTCGT
TCGTCGCCGACCCCGTGCTCACGCAGGCGCTCGGGCTGGCCGCCCTCTTC
GTGTCGCTCGGCATCACCGCCTTCGGCGTGCTGCTGTACTACGCGTCTGA
CCACTCCAAGTACCACTCGCTGCCGCGCGCAGTGGCCGTGCTCGGCTCGT
TGGCCGTCGCCGCGCAGGTGCTCGTGTCGTACGGGCTGCTCAATGGGTCG
CGCGCCGTCGTGTACGCCGCCAGCATACTGCAGGGCACGGGCGCCGGCTG
CATCTACGTCGTCAGCATCGTCGTGGTGCAGGACTGGGTGCCCGAGTCGC
CCGCGCTGGCCACCGGGCTCAGCCTACTGTTCGGAGGCGCCGGCTCGCTG
TTCGGCATCTACGCGTTCCAGGCGCTGGTGCACGCTATGGGCGACGCGCT
GCCCGCCATGGCCGTGGCCAGCCTGGGCGCCGGCCTGGTGTCGGTCACGG
CGTCCATGTTCATCGAGCGCCCGCCCGACCGCTGGTGCCCCGTGGCGGAG
ATTTTCGACCCGCTCACCACCATGACGCTCAAGGACGCGCACAGCGCGCG
CGGCGCCAAGCGCGTAGATGAGCAGTCTATCTGCTACTCGGCTATTGTTG
ATTTTGGTGACGACGACGTGTGCCATCATAAACAAAACAAGAGCGAATGC
GGCAGCGCGCGGCTGTCATGCTATGATATCGTCGTCGACCCGGCGTTTGC
GCTTGTTTTTGTGTGCGTGTTTGTGGCGGCGGGGCCCGGTTACGGTTTTG
TGCTGTCGTACCCGCTTATGCTTCACTCGTTGTTCCACATGCCGCTGGTG
GACGCCAACCAGATGCTGTGCTACGCCACGTTTTTCGGGGTGGTGGGAAG
GCTGGCTCTGGGCGTGGCCATTGACACGCTGTCGTCCAAGTGTAGCGCGG
ACGAGGGCGCGGCGGCGTCCATCCGCGGCTCCAAAACGACCAACTGTTTC
ATCCTGCTGCTGCAGACGGCGGCGCTGGCGCTCATGCCGGCGGCCATCCG
CTGGCACAGCGCGTGGCTGTTCCACGCGGCGGTGTTCGGCGTGTTCGTGG
CGTTCAACGGCGGCGCGGTGGTGTCGGCGTGCCTGGCGCGCGACGTGTTT
GCGCCGGACAATTCGACGCTGGCGTTTGCGCTGCTGGGCGTGGCGGTGGG
CGTGGCGCGCGCGCTGTTCTCGGTGGTGCTGGCGGCGTGCGCCGACGGCA
GCGGCGTTGGCGCGTACGACTGGTACATCGGGTGGTCGGTGGTGGTGTCG
GTGGCGGGCGCCGCGGCGTCGTTCGCCATCGAACCTGCAAAGTGCGTGAA
CTTAGGCGCGGCAAGCAACCGCGTCTTCGCGGACGCGCAGGTATAG
back to top

protein sequence of Gvermi12765.t1

>Gvermi12765.t1 ID=Gvermi12765.t1|Name=Gvermi12765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=482bp
MRLSHWRWLGPVPAAFVLQAVFGLQFANGVFASFVADPVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHSLPRAVAVLGSLAVAAQVLVSYGLLNGS
RAVVYAASILQGTGAGCIYVVSIVVVQDWVPESPALATGLSLLFGGAGSL
FGIYAFQALVHAMGDALPAMAVASLGAGLVSVTASMFIERPPDRWCPVAE
IFDPLTTMTLKDAHSARGAKRVDEQSICYSAIVDFGDDDVCHHKQNKSEC
GSARLSCYDIVVDPAFALVFVCVFVAAGPGYGFVLSYPLMLHSLFHMPLV
DANQMLCYATFFGVVGRLALGVAIDTLSSKCSADEGAAASIRGSKTTNCF
ILLLQTAALALMPAAIRWHSAWLFHAAVFGVFVAFNGGAVVSACLARDVF
APDNSTLAFALLGVAVGVARALFSVVLAACADGSGVGAYDWYIGWSVVVS
VAGAAASFAIEPAKCVNLGAASNRVFADAQV*
back to top

mRNA from alignment at ScGOVlb_425:1425629..1427074-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12765.t1 ID=Gvermi12765.t1|Name=Gvermi12765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1425629..1427074- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTTCGCACTGGCGGTGGCTCGGTCCTGTTCCGGCTGCGTTCGT
GCTGCAGGCCGTGTTCGGCCTGCAGTTTGCCAACGGCGTGTTCGCCTCGT
TCGTCGCCGACCCCGTGCTCACGCAGGCGCTCGGGCTGGCCGCCCTCTTC
GTGTCGCTCGGCATCACCGCCTTCGGCGTGCTGCTGTACTACGCGTCTGA
CCACTCCAAGTACCACTCGCTGCCGCGCGCAGTGGCCGTGCTCGGCTCGT
TGGCCGTCGCCGCGCAGGTGCTCGTGTCGTACGGGCTGCTCAATGGGTCG
CGCGCCGTCGTGTACGCCGCCAGCATACTGCAGGGCACGGGCGCCGGCTG
CATCTACGTCGTCAGCATCGTCGTGGTGCAGGACTGGGTGCCCGAGTCGC
CCGCGCTGGCCACCGGGCTCAGCCTACTGTTCGGAGGCGCCGGCTCGCTG
TTCGGCATCTACGCGTTCCAGGCGCTGGTGCACGCTATGGGCGACGCGCT
GCCCGCCATGGCCGTGGCCAGCCTGGGCGCCGGCCTGGTGTCGGTCACGG
CGTCCATGTTCATCGAGCGCCCGCCCGACCGCTGGTGCCCCGTGGCGGAG
ATTTTCGACCCGCTCACCACCATGACGCTCAAGGACGCGCACAGCGCGCG
CGGCGCCAAGCGCGTAGATGAGCAGTCTATCTGCTACTCGGCTATTGTTG
ATTTTGGTGACGACGACGTGTGCCATCATAAACAAAACAAGAGCGAATGC
GGCAGCGCGCGGCTGTCATGCTATGATATCGTCGTCGACCCGGCGTTTGC
GCTTGTTTTTGTGTGCGTGTTTGTGGCGGCGGGGCCCGGTTACGGTTTTG
TGCTGTCGTACCCGCTTATGCTTCACTCGTTGTTCCACATGCCGCTGGTG
GACGCCAACCAGATGCTGTGCTACGCCACGTTTTTCGGGGTGGTGGGAAG
GCTGGCTCTGGGCGTGGCCATTGACACGCTGTCGTCCAAGTGTAGCGCGG
ACGAGGGCGCGGCGGCGTCCATCCGCGGCTCCAAAACGACCAACTGTTTC
ATCCTGCTGCTGCAGACGGCGGCGCTGGCGCTCATGCCGGCGGCCATCCG
CTGGCACAGCGCGTGGCTGTTCCACGCGGCGGTGTTCGGCGTGTTCGTGG
CGTTCAACGGCGGCGCGGTGGTGTCGGCGTGCCTGGCGCGCGACGTGTTT
GCGCCGGACAATTCGACGCTGGCGTTTGCGCTGCTGGGCGTGGCGGTGGG
CGTGGCGCGCGCGCTGTTCTCGGTGGTGCTGGCGGCGTGCGCCGACGGCA
GCGGCGTTGGCGCGTACGACTGGTACATCGGGTGGTCGGTGGTGGTGTCG
GTGGCGGGCGCCGCGGCGTCGTTCGCCATCGAACCTGCAAAGTGCGTGAA
CTTAGGCGCGGCAAGCAACCGCGTCTTCGCGGACGCGCAGGTATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1425629..1427074-

>Gvermi12765.t1 ID=Gvermi12765.t1|Name=Gvermi12765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1425629..1427074- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTTCGCACTGGCGGTGGCTCGGTCCTGTTCCGGCTGCGTTCGT
GCTGCAGGCCGTGTTCGGCCTGCAGTTTGCCAACGGCGTGTTCGCCTCGT
TCGTCGCCGACCCCGTGCTCACGCAGGCGCTCGGGCTGGCCGCCCTCTTC
GTGTCGCTCGGCATCACCGCCTTCGGCGTGCTGCTGTACTACGCGTCTGA
CCACTCCAAGTACCACTCGCTGCCGCGCGCAGTGGCCGTGCTCGGCTCGT
TGGCCGTCGCCGCGCAGGTGCTCGTGTCGTACGGGCTGCTCAATGGGTCG
CGCGCCGTCGTGTACGCCGCCAGCATACTGCAGGGCACGGGCGCCGGCTG
CATCTACGTCGTCAGCATCGTCGTGGTGCAGGACTGGGTGCCCGAGTCGC
CCGCGCTGGCCACCGGGCTCAGCCTACTGTTCGGAGGCGCCGGCTCGCTG
TTCGGCATCTACGCGTTCCAGGCGCTGGTGCACGCTATGGGCGACGCGCT
GCCCGCCATGGCCGTGGCCAGCCTGGGCGCCGGCCTGGTGTCGGTCACGG
CGTCCATGTTCATCGAGCGCCCGCCCGACCGCTGGTGCCCCGTGGCGGAG
ATTTTCGACCCGCTCACCACCATGACGCTCAAGGACGCGCACAGCGCGCG
CGGCGCCAAGCGCGTAGATGAGCAGTCTATCTGCTACTCGGCTATTGTTG
ATTTTGGTGACGACGACGTGTGCCATCATAAACAAAACAAGAGCGAATGC
GGCAGCGCGCGGCTGTCATGCTATGATATCGTCGTCGACCCGGCGTTTGC
GCTTGTTTTTGTGTGCGTGTTTGTGGCGGCGGGGCCCGGTTACGGTTTTG
TGCTGTCGTACCCGCTTATGCTTCACTCGTTGTTCCACATGCCGCTGGTG
GACGCCAACCAGATGCTGTGCTACGCCACGTTTTTCGGGGTGGTGGGAAG
GCTGGCTCTGGGCGTGGCCATTGACACGCTGTCGTCCAAGTGTAGCGCGG
ACGAGGGCGCGGCGGCGTCCATCCGCGGCTCCAAAACGACCAACTGTTTC
ATCCTGCTGCTGCAGACGGCGGCGCTGGCGCTCATGCCGGCGGCCATCCG
CTGGCACAGCGCGTGGCTGTTCCACGCGGCGGTGTTCGGCGTGTTCGTGG
CGTTCAACGGCGGCGCGGTGGTGTCGGCGTGCCTGGCGCGCGACGTGTTT
GCGCCGGACAATTCGACGCTGGCGTTTGCGCTGCTGGGCGTGGCGGTGGG
CGTGGCGCGCGCGCTGTTCTCGGTGGTGCTGGCGGCGTGCGCCGACGGCA
GCGGCGTTGGCGCGTACGACTGGTACATCGGGTGGTCGGTGGTGGTGTCG
GTGGCGGGCGCCGCGGCGTCGTTCGCCATCGAACCTGCAAAGTGCGTGAA
CTTAGGCGCGGCAAGCAACCGCGTCTTCGCGGACGCGCAGGTATAG
back to top