Gvermi7703.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7703.t1
Unique NameGvermi7703.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Homology
BLAST of Gvermi7703.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 6.170e-33
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 0
Query:   36 VRNEVRNSQCAVNVCFAIDGSGSVSDSEFGLQKDFVLDVASILS-GIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIGDGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGEVFEIHDYVDLSIVIDELVYDICG 223
            VR  V  + C +NVCFA+DGS SV+  ++ +QKDFV  ++++L   + N+SFSAVQYG Q  PIS  T+  + F   V  +       + I  GI YC  +LL       KI++ GDGR     D +     F+ F  P G LS V +GF +      +A AGGG +FEI +Y+D   ++ +L  ++CG
Sbjct:   35 VRRMVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKTDAVSIAASFKDFH-PNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVCG 222          
BLAST of Gvermi7703.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 109 bits (273), Expect = 9.800e-26
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 0
Query:   44 QCAVNVCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIGDGRHNHGPD--PLESVKKFRQFFG-PQGSLSWVNIGFGDVQFSSEMAAAGGGE-VFEIHDYVDLSIVIDELVYDICG 223
            +C  N+CFA+DGSGS+  +EF L+KDF   VA++++    A F+AVQYG +   IS  TED + FL AV  T      RT IA G+  C  +          IV++GDGR N      PL+ V   + F   P  ++S V +GF D   +     AGG E VF +  +++++ V+ ELV ++CG
Sbjct:   56 RCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGF-DADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCG 238          
BLAST of Gvermi7703.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 105 bits (263), Expect = 4.070e-24
Identity = 70/210 (33.33%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   18 NVLTASATVHSTDSAPTTVRNEVRNSQCAVNVCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPR-GVAKIVMIGDGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGE---VFEIHDYVDLSIVIDELVYDICG 223
            N + AS    + DS  T V    R+  C +++CFA+DGSGS+S  E+ +QKD V  +A IL+   NA+FSAVQYG     IS  T D   F++ V N++  +  RT +  G+ +C  ++   P+ G  K+V++GDGR N+    L  V K  +      S+    +G G+   + ++    GG+   V+   +Y D+  V+ +LV  +C 
Sbjct:   54 NPVAASLGAKTIDSLQTEV---CRDGSCDISLCFALDGSGSISAEEYQVQKDLVKLIA-ILAAPANATFSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDNYMESSLALVLKSAE------SVDIFAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALCS 253          
BLAST of Gvermi7703.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 98.6 bits (244), Expect = 1.610e-21
Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 0
Query:   40 VRNSQCAVNVCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIGDGRHNHGP--DPLESVKKFRQFFG-PQGSLSWVNIGFGDVQFSSEMAAAGGGEVFEIHDYVDLSIVIDELVYDICGS 224
            V  + C  N+CFAIDGS S++D EF LQ DFV  +  ++S    + +SA+QYG +   +S  T+D   FL  V+ T   +  RT IA GI  C  +         KI+++GDGR        PL+      QF   P  S+  V + F   +   E+       VF + D++ +  V+ +LV  +CG+
Sbjct:   49 VEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITG-DPDRVFSVADWMSVVDVLADLVEQVCGA 235          
BLAST of Gvermi7703.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-18
Identity = 60/183 (32.79%), Postives = 94/183 (51.37%), Query Frame = 0
Query:   41 RNSQCAVNVCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAK-IVMIGDGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGEVFEIHDYVDLSIVIDELVYDIC 222
            R  +C + +CFA+DGSGS+S  +F +Q+D V  +AS+      A+FSAVQYG     IS  T +  +F RAV +++F++  RT I  G+ +C   L   PRG  + I+++GDGR N     L  V            +S V IGF     +          +  ++ Y D+  ++ +LV  +C
Sbjct:   61 RGRRCNMRLCFALDGSGSISPVQFKVQQDLVKLLASVARE-GGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNFFTLALPLVLSTLNDI----QISAVGIGFPRNSRTLLDITGSRSRLCAVNRYSDIRRIVFKLVRGLC 238          
BLAST of Gvermi7703.t1 vs. uniprot
Match: A0A7S1XDR4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDR4_9RHOD)

HSP 1 Score: 65.5 bits (158), Expect = 5.100e-9
Identity = 51/164 (31.10%), Postives = 75/164 (45.73%), Query Frame = 0
Query:   45 CAVN-VCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRN-----ASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIGDGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGEVF 202
            C +N +CFAID SGS+SDS F  + + VL VA  L  I         ++A+ +GA    +S+ T D   F + V N   RKD  T+ A   E C   LL    GV  IV++ DG  +     + +    +    P   +  V +G    + S   + A G + F
Sbjct:   33 CTINNICFAIDESGSISDSAFVDETNVVLQVARALDMISKMQGIQTKYAAIDFGASESTVSSLT-DVASFEQRVSNNPHRKDPDTLYAPAFERCG-SLLSGASGVRAIVLVTDGAPSDTTAAIVAANALKSM--PNTFIITVGVGLTSSRASFLQSLASGPDFF 192          
BLAST of Gvermi7703.t1 vs. uniprot
Match: UPI0016046404 (cartilage matrix protein-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016046404)

HSP 1 Score: 57.4 bits (137), Expect = 4.000e-6
Identity = 49/203 (24.14%), Postives = 91/203 (44.83%), Query Frame = 0
Query:   38 NEVRNSQCA---VNVCFAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISAQTEDHEQFLRAVQNTLFRKDGRTVIAGG------IEYCFFELLLAPRGVAK-----IVMIGDGR-HNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGE-VFEIHDYVDLSIVIDELVYDICGS 224
            N   NS+C    V++ F++DGSGSV+++ F   KDF  D   ++      S +  + GA +Y  + +TE            +   DG   + GG      + Y    +L A  G        +V++ DGR ++    P E ++  R        +    +G G  +++S +A AG  E V+ +  + +++ +   +  D+CG+
Sbjct:   30 NTTNNSECRDTNVDIVFSLDGSGSVTETNFQRVKDFAKD---LIQEFNINSQNGTRVGAVQYSSTIRTEFKLNRYNTSAEVMSAIDGIRYLRGGTYTGAALRYLSDNILTAAAGDRPDRANIVVLVTDGRSYDSVVTPAEDLRSKR--------VQLYAVGVGKAEYASLLAIAGDPEYVYRVGSFANITSLTSAVQEDLCGN 221          
The following BLAST results are available for this feature:
BLAST of Gvermi7703.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3ID60_9FLOR6.170e-3338.10Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IQR5_9FLOR9.800e-2638.04Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
R7Q5C2_CHOCR4.070e-2433.33VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3ISA4_9FLOR1.610e-2132.98VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q3A9_CHOCR1.030e-1832.79VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S1XDR4_9RHOD5.100e-931.10Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
UPI00160464044.000e-624.14cartilage matrix protein-like n=1 Tax=Branchiostom... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 46..222
e-value: 2.4E-14
score: 63.7
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 48..209
e-value: 3.0E-15
score: 56.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 48..217
score: 13.96868
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 40..225
e-value: 3.0E-19
score: 71.6
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 33..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..227
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..15
score: 5.0
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 47..169
e-value: 4.29344E-11
score: 57.3014

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2810894..2811577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1Gvermi7703.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 2810894..2811577 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MKLSTLFSATVFLGCLCNVLTASATVHSTDSAPTTVRNEVRNSQCAVNVC
FAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISA
QTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIG
DGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGE
VFEIHDYVDLSIVIDELVYDICGSSGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf