Gvermi7054.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7054.t1
Unique NameGvermi7054.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Homology
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BLAST of Gvermi7054.t1 vs. uniprot
Match: A0A2V3IJ31_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ31_9FLOR)

HSP 1 Score: 318 bits (816), Expect = 1.140e-97
Identity = 288/377 (76.39%), Postives = 315/377 (83.55%), Query Frame = 0 
Query:    2 AQPRLLHSFTARMYSHLFLSIMRAATRPMAVRGFELLSDAVQSGNVHNLVGPRSFNFVFVALSRVGLIDEARHVAEMCYSVGYYLNRYSYNALLNACAKKQRLDVAFSTLREMAEHRVSPDVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQMERESERGTASIVQNAHGVAPDLVTYNTLLSALASLGCPQFDRALRVKTHMEKRGIQCNEVSYNALMATAAKSDRVREAFEIYDEMLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGASSGNSDRAMAILDTMRSTDGCEPDVITYSTVIDVLGRNEHFDQMKRVFEQMK 378
            A P L   FTAR+YS  FLS+M+  TR  A R F  L   V+  +V  ++GPR+FNFVFVALSRV +IDEA+ VA MCY  GYYLNRYSYNALLNACAK+QRLDVA +TLREMAEH VSPDVV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AQMERES     SIV+N  GVAPDLVTYNTLLSALA+L  P F+RA+RVK HME+RG+ CNEVSYNALMATAAKSDRV EAFEIY     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRG   GN DRA+ +L  MR+T  C PDVITYST+IDVLGRNE FD+MKR+F++M+
Sbjct:  114 AHPPLYARFTARIYSFFFLSLMKLGTRSHAARAFSSLDHIVRHMDVSTMLGPRAFNFVFVALSRVAMIDEAQQVARMCYHAGYYLNRYSYNALLNACAKEQRLDVALATLREMAEHNVSPDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVAQMERESRSTEGSIVENGLGVAPDLVTYNTLLSALAALDKPNFERAIRVKNHMEQRGLNCNEVSYNALMATAAKSDRVAEAFEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGCEDGNIDRALDLLQIMRNTPRCAPDVITYSTIIDVLGRNERFDEMKRLFKEMQ 490
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BLAST of Gvermi7054.t1 vs. uniprot
Match: R7Q6H8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6H8_CHOCR)

HSP 1 Score: 137 bits (345), Expect = 1.270e-30
Identity = 171/484 (35.33%), Postives = 206/484 (42.56%), Query Frame = 0 
Query:   10 FTARMYSHLFLSIMRAATRPMAVRGFELLSDAVQSGNVHNLVGPRSFNFVFVALSRVGLIDEARHVAEMCYSVGYYLNRYSYNALLNACA----------------------------------------------------------------------KKQRLDVAFSTLR----EMAEHRVSP---DVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQM-ERESERGTASIVQNAH----------------------------------GVAPDLVTYNTLLSALASLGCPQFDRALRVKTHMEKRGIQCNEVSYNALMATAAKSDRVREAFEIYDEMLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-GASSGNSDRAMAILDTMRSTDGCEPDVITYSTVIDVLGRNEHFDQMKRVFEQMKVE 380
            FT+R+Y+ LF S+M+      A R FE     V       L+GPR++NF+FV LSR   +DEA  V   C   G+YLNRYSYNA LNA                                                                        K + L+ AF  +     E A  +  P   D+                                                           Q  E   E+G  +  Q  +                                  GV+PDLVTYNTL+S LA    P F+RA+RVK HME R + CNEVSYNALMA AA+S+RV+ AFEIYDEM+             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR  A     + A+ +   MR T GC PDVITYSTVID LGR   F Q++ V ++M  E
Sbjct:  122 FTSRIYTDLFFSLMKLGGPRDADRAFEEWQYLVDRDRDQTLLGPRAYNFLFVLLSRNARVDEAMSVRNNCSENGFYLNRYSYNAFLNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIVNGLRKNKMLEEAFQLVALMETEAANGKSIPLITDIPKCVEEPETGHARRQSPEAVDKPAHVVAAAPLIEALTTARRATTAKPGETLTVEHKGKKQGGETREEKGNPAAEQGKNEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGVSPDLVTYNTLISGLACEEFPDFERAMRVKQHMESRRVICNEVSYNALMAVAARSNRVQIAFEIYDEMIGKSLRPNCECFTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSAGRDAGEAALQVFQEMRETPGCTPDVITYSTVIDALGRGGRFGQVRDVLDEMSRE 605
The following BLAST results are available for this feature:
BLAST of Gvermi7054.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJ31_9FLOR1.140e-9776.39Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7Q6H8_CHOCR1.270e-3035.33Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 197..342
e-value: 8.8E-43
score: 148.8
coord: 54..196
e-value: 3.1E-34
score: 120.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 414..486
e-value: 8.6E-16
score: 60.0
coord: 343..413
e-value: 3.0E-22
score: 81.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 242..288
e-value: 5.7E-11
score: 42.5
coord: 121..169
e-value: 2.4E-14
score: 53.3
coord: 384..431
e-value: 4.3E-17
score: 62.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 124..158
e-value: 4.5E-7
score: 27.6
coord: 207..243
e-value: 0.0015
score: 16.5
coord: 280..313
e-value: 1.6E-5
score: 22.8
coord: 89..123
e-value: 5.5E-7
score: 27.4
coord: 422..452
e-value: 9.9E-7
score: 26.6
coord: 352..385
e-value: 9.4E-9
score: 32.9
coord: 387..421
e-value: 8.6E-10
score: 36.2
coord: 244..278
e-value: 5.5E-8
score: 30.5
coord: 159..187
e-value: 2.7E-5
score: 22.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 207..222
e-value: 0.57
score: 10.6
coord: 89..118
e-value: 3.5E-4
score: 20.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 307..363
e-value: 3.2E-12
score: 46.3
coord: 443..484
e-value: 4.0E-4
score: 20.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..311
score: 9.920034
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 385..419
score: 13.054966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 420..454
score: 11.772493
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 87..121
score: 11.388848
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 242..276
score: 12.112294
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 122..156
score: 11.980759
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 157..187
score: 9.941957
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 350..384
score: 12.035565
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 205..241
score: 10.215989
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 223..485
coord: 35..395

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1317465..1319078 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1Gvermi7054.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1317465..1319078 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MAQPRLLHSFTARMYSHLFLSIMRAATRPMAVRGFELLSDAVQSGNVHNL
VGPRSFNFVFVALSRVGLIDEARHVAEMCYSVGYYLNRYSYNALLNACAK
KQRLDVAFSTLREMAEHRVSPDVVSFNVLISCCVRSGSVDIALNILSRMK
DWNIQPDIYSYNSVINGLRKSNMLDQAFELVAQMERESERGTASIVQNAH
GVAPDLVTYNTLLSALASLGCPQFDRALRVKTHMEKRGIQCNEVSYNALM
ATAAKSDRVREAFEIYDEMLCRGLRPNCECFTTLITLCGRANLLERAFEV
HKHMLASNIQPNVITYNALLTACRGASSGNSDRAMAILDTMRSTDGCEPD
VITYSTVIDVLGRNEHFDQMKRVFEQMKVEGIEPNLVTYTSMIAGMTRAN
KMEEAVRILDDMERDGIEPNVYTFSSLINGASKRGDFEGAMDILQLMRDK
GIWPSSITYTMLLQLGMRLGSHSAVRRVFAEMEADSRVERRKVQRFEEAV
ARMDLSAPAKNRAALRRIGELVEDCVGSDVRGGDATM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat