Gvermi7054.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7054.t1
Unique NameGvermi7054.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1317465..1319078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7054Gvermi7054Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1317465..1319078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1.stop1Gvermi7054.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1317465..1317467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1.CDS1Gvermi7054.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1317465..1319078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1.exon1Gvermi7054.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1317465..1319078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1.start1Gvermi7054.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1319076..1319078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7054.t1Gvermi7054.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1317465..1319078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MAQPRLLHSFTARMYSHLFLSIMRAATRPMAVRGFELLSDAVQSGNVHNL
VGPRSFNFVFVALSRVGLIDEARHVAEMCYSVGYYLNRYSYNALLNACAK
KQRLDVAFSTLREMAEHRVSPDVVSFNVLISCCVRSGSVDIALNILSRMK
DWNIQPDIYSYNSVINGLRKSNMLDQAFELVAQMERESERGTASIVQNAH
GVAPDLVTYNTLLSALASLGCPQFDRALRVKTHMEKRGIQCNEVSYNALM
ATAAKSDRVREAFEIYDEMLCRGLRPNCECFTTLITLCGRANLLERAFEV
HKHMLASNIQPNVITYNALLTACRGASSGNSDRAMAILDTMRSTDGCEPD
VITYSTVIDVLGRNEHFDQMKRVFEQMKVEGIEPNLVTYTSMIAGMTRAN
KMEEAVRILDDMERDGIEPNVYTFSSLINGASKRGDFEGAMDILQLMRDK
GIWPSSITYTMLLQLGMRLGSHSAVRRVFAEMEADSRVERRKVQRFEEAV
ARMDLSAPAKNRAALRRIGELVEDCVGSDVRGGDATM*
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spliced messenger RNA

>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_24229:1317465..1319078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAACCCCGCCTGCTGCACAGCTTCACGGCGCGCATGTACTCGCA
CCTGTTTCTGTCCATCATGCGCGCCGCCACCAGGCCCATGGCCGTGCGCG
GCTTTGAGCTGCTCAGCGACGCCGTGCAGTCGGGCAACGTGCACAACCTC
GTCGGGCCGCGCTCGTTCAACTTTGTGTTTGTGGCGCTCAGCCGCGTGGG
CCTCATCGACGAGGCGCGCCACGTTGCCGAGATGTGCTACTCGGTCGGCT
ACTACCTCAACCGCTACTCGTACAACGCGCTGCTCAACGCGTGCGCCAAA
AAGCAGCGCCTGGACGTGGCGTTCAGCACGCTGCGGGAGATGGCCGAGCA
CCGCGTGTCGCCCGACGTGGTCTCGTTCAACGTGCTCATCTCGTGCTGCG
TGCGCTCGGGCTCGGTTGACATTGCGCTCAACATCCTGTCCAGAATGAAG
GACTGGAACATCCAGCCGGACATTTACTCGTACAACTCGGTGATCAACGG
GCTGAGGAAGAGCAACATGCTGGACCAGGCGTTTGAGCTGGTGGCCCAGA
TGGAGAGGGAGTCGGAGCGCGGCACGGCGTCCATTGTGCAAAACGCGCAC
GGCGTGGCGCCGGACCTGGTGACGTACAACACGCTGCTGTCGGCGCTGGC
AAGCCTGGGCTGCCCGCAGTTTGACCGCGCGCTCAGGGTCAAGACGCACA
TGGAGAAGAGGGGCATCCAGTGCAACGAGGTGTCGTACAACGCGCTGATG
GCCACGGCGGCCAAGTCGGACCGCGTGAGGGAGGCGTTTGAAATCTACGA
CGAAATGCTGTGCAGAGGGCTGCGCCCCAACTGCGAGTGCTTCACCACGC
TGATCACGTTGTGCGGCAGGGCCAACCTGCTGGAGCGCGCCTTTGAGGTG
CACAAGCACATGCTGGCGTCCAACATCCAGCCCAACGTGATCACGTACAA
CGCGCTGTTGACGGCGTGCCGCGGCGCCAGCAGCGGCAACAGCGACCGCG
CCATGGCCATTTTGGACACGATGAGGAGCACGGACGGCTGCGAACCGGAT
GTGATCACGTACTCGACCGTGATCGACGTGCTGGGGCGCAATGAGCACTT
TGACCAAATGAAGCGCGTGTTTGAGCAGATGAAGGTGGAGGGCATCGAAC
CGAACCTGGTGACGTACACGAGCATGATTGCGGGCATGACGAGGGCCAAC
AAGATGGAGGAGGCCGTGCGCATCCTGGACGACATGGAGCGCGACGGCAT
CGAGCCGAATGTGTACACGTTTTCGAGCCTGATCAACGGCGCGTCGAAGC
GCGGCGACTTTGAGGGCGCCATGGACATTTTGCAGCTGATGAGGGACAAG
GGCATCTGGCCGAGCAGCATCACGTACACGATGCTGCTGCAGCTGGGCAT
GCGGCTGGGCAGCCACAGCGCCGTGCGGCGCGTGTTTGCGGAGATGGAGG
CGGACTCGCGCGTGGAGCGGCGCAAGGTGCAGCGCTTCGAGGAGGCGGTG
GCGCGCATGGACCTGTCGGCGCCGGCGAAGAACCGCGCGGCGCTGCGCAG
GATTGGCGAGCTGGTGGAGGACTGCGTGGGGAGCGACGTGCGGGGGGGGG
ACGCCACCATGTAG
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protein sequence of Gvermi7054.t1

>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MAQPRLLHSFTARMYSHLFLSIMRAATRPMAVRGFELLSDAVQSGNVHNL
VGPRSFNFVFVALSRVGLIDEARHVAEMCYSVGYYLNRYSYNALLNACAK
KQRLDVAFSTLREMAEHRVSPDVVSFNVLISCCVRSGSVDIALNILSRMK
DWNIQPDIYSYNSVINGLRKSNMLDQAFELVAQMERESERGTASIVQNAH
GVAPDLVTYNTLLSALASLGCPQFDRALRVKTHMEKRGIQCNEVSYNALM
ATAAKSDRVREAFEIYDEMLCRGLRPNCECFTTLITLCGRANLLERAFEV
HKHMLASNIQPNVITYNALLTACRGASSGNSDRAMAILDTMRSTDGCEPD
VITYSTVIDVLGRNEHFDQMKRVFEQMKVEGIEPNLVTYTSMIAGMTRAN
KMEEAVRILDDMERDGIEPNVYTFSSLINGASKRGDFEGAMDILQLMRDK
GIWPSSITYTMLLQLGMRLGSHSAVRRVFAEMEADSRVERRKVQRFEEAV
ARMDLSAPAKNRAALRRIGELVEDCVGSDVRGGDATM*
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mRNA from alignment at ScGOVlb_24229:1317465..1319078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_24229:1317465..1319078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAACCCCGCCTGCTGCACAGCTTCACGGCGCGCATGTACTCGCA
CCTGTTTCTGTCCATCATGCGCGCCGCCACCAGGCCCATGGCCGTGCGCG
GCTTTGAGCTGCTCAGCGACGCCGTGCAGTCGGGCAACGTGCACAACCTC
GTCGGGCCGCGCTCGTTCAACTTTGTGTTTGTGGCGCTCAGCCGCGTGGG
CCTCATCGACGAGGCGCGCCACGTTGCCGAGATGTGCTACTCGGTCGGCT
ACTACCTCAACCGCTACTCGTACAACGCGCTGCTCAACGCGTGCGCCAAA
AAGCAGCGCCTGGACGTGGCGTTCAGCACGCTGCGGGAGATGGCCGAGCA
CCGCGTGTCGCCCGACGTGGTCTCGTTCAACGTGCTCATCTCGTGCTGCG
TGCGCTCGGGCTCGGTTGACATTGCGCTCAACATCCTGTCCAGAATGAAG
GACTGGAACATCCAGCCGGACATTTACTCGTACAACTCGGTGATCAACGG
GCTGAGGAAGAGCAACATGCTGGACCAGGCGTTTGAGCTGGTGGCCCAGA
TGGAGAGGGAGTCGGAGCGCGGCACGGCGTCCATTGTGCAAAACGCGCAC
GGCGTGGCGCCGGACCTGGTGACGTACAACACGCTGCTGTCGGCGCTGGC
AAGCCTGGGCTGCCCGCAGTTTGACCGCGCGCTCAGGGTCAAGACGCACA
TGGAGAAGAGGGGCATCCAGTGCAACGAGGTGTCGTACAACGCGCTGATG
GCCACGGCGGCCAAGTCGGACCGCGTGAGGGAGGCGTTTGAAATCTACGA
CGAAATGCTGTGCAGAGGGCTGCGCCCCAACTGCGAGTGCTTCACCACGC
TGATCACGTTGTGCGGCAGGGCCAACCTGCTGGAGCGCGCCTTTGAGGTG
CACAAGCACATGCTGGCGTCCAACATCCAGCCCAACGTGATCACGTACAA
CGCGCTGTTGACGGCGTGCCGCGGCGCCAGCAGCGGCAACAGCGACCGCG
CCATGGCCATTTTGGACACGATGAGGAGCACGGACGGCTGCGAACCGGAT
GTGATCACGTACTCGACCGTGATCGACGTGCTGGGGCGCAATGAGCACTT
TGACCAAATGAAGCGCGTGTTTGAGCAGATGAAGGTGGAGGGCATCGAAC
CGAACCTGGTGACGTACACGAGCATGATTGCGGGCATGACGAGGGCCAAC
AAGATGGAGGAGGCCGTGCGCATCCTGGACGACATGGAGCGCGACGGCAT
CGAGCCGAATGTGTACACGTTTTCGAGCCTGATCAACGGCGCGTCGAAGC
GCGGCGACTTTGAGGGCGCCATGGACATTTTGCAGCTGATGAGGGACAAG
GGCATCTGGCCGAGCAGCATCACGTACACGATGCTGCTGCAGCTGGGCAT
GCGGCTGGGCAGCCACAGCGCCGTGCGGCGCGTGTTTGCGGAGATGGAGG
CGGACTCGCGCGTGGAGCGGCGCAAGGTGCAGCGCTTCGAGGAGGCGGTG
GCGCGCATGGACCTGTCGGCGCCGGCGAAGAACCGCGCGGCGCTGCGCAG
GATTGGCGAGCTGGTGGAGGACTGCGTGGGGAGCGACGTGCGGGGGGGGG
ACGCCACCATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1317465..1319078-

>Gvermi7054.t1 ID=Gvermi7054.t1|Name=Gvermi7054.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_24229:1317465..1319078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAACCCCGCCTGCTGCACAGCTTCACGGCGCGCATGTACTCGCA
CCTGTTTCTGTCCATCATGCGCGCCGCCACCAGGCCCATGGCCGTGCGCG
GCTTTGAGCTGCTCAGCGACGCCGTGCAGTCGGGCAACGTGCACAACCTC
GTCGGGCCGCGCTCGTTCAACTTTGTGTTTGTGGCGCTCAGCCGCGTGGG
CCTCATCGACGAGGCGCGCCACGTTGCCGAGATGTGCTACTCGGTCGGCT
ACTACCTCAACCGCTACTCGTACAACGCGCTGCTCAACGCGTGCGCCAAA
AAGCAGCGCCTGGACGTGGCGTTCAGCACGCTGCGGGAGATGGCCGAGCA
CCGCGTGTCGCCCGACGTGGTCTCGTTCAACGTGCTCATCTCGTGCTGCG
TGCGCTCGGGCTCGGTTGACATTGCGCTCAACATCCTGTCCAGAATGAAG
GACTGGAACATCCAGCCGGACATTTACTCGTACAACTCGGTGATCAACGG
GCTGAGGAAGAGCAACATGCTGGACCAGGCGTTTGAGCTGGTGGCCCAGA
TGGAGAGGGAGTCGGAGCGCGGCACGGCGTCCATTGTGCAAAACGCGCAC
GGCGTGGCGCCGGACCTGGTGACGTACAACACGCTGCTGTCGGCGCTGGC
AAGCCTGGGCTGCCCGCAGTTTGACCGCGCGCTCAGGGTCAAGACGCACA
TGGAGAAGAGGGGCATCCAGTGCAACGAGGTGTCGTACAACGCGCTGATG
GCCACGGCGGCCAAGTCGGACCGCGTGAGGGAGGCGTTTGAAATCTACGA
CGAAATGCTGTGCAGAGGGCTGCGCCCCAACTGCGAGTGCTTCACCACGC
TGATCACGTTGTGCGGCAGGGCCAACCTGCTGGAGCGCGCCTTTGAGGTG
CACAAGCACATGCTGGCGTCCAACATCCAGCCCAACGTGATCACGTACAA
CGCGCTGTTGACGGCGTGCCGCGGCGCCAGCAGCGGCAACAGCGACCGCG
CCATGGCCATTTTGGACACGATGAGGAGCACGGACGGCTGCGAACCGGAT
GTGATCACGTACTCGACCGTGATCGACGTGCTGGGGCGCAATGAGCACTT
TGACCAAATGAAGCGCGTGTTTGAGCAGATGAAGGTGGAGGGCATCGAAC
CGAACCTGGTGACGTACACGAGCATGATTGCGGGCATGACGAGGGCCAAC
AAGATGGAGGAGGCCGTGCGCATCCTGGACGACATGGAGCGCGACGGCAT
CGAGCCGAATGTGTACACGTTTTCGAGCCTGATCAACGGCGCGTCGAAGC
GCGGCGACTTTGAGGGCGCCATGGACATTTTGCAGCTGATGAGGGACAAG
GGCATCTGGCCGAGCAGCATCACGTACACGATGCTGCTGCAGCTGGGCAT
GCGGCTGGGCAGCCACAGCGCCGTGCGGCGCGTGTTTGCGGAGATGGAGG
CGGACTCGCGCGTGGAGCGGCGCAAGGTGCAGCGCTTCGAGGAGGCGGTG
GCGCGCATGGACCTGTCGGCGCCGGCGAAGAACCGCGCGGCGCTGCGCAG
GATTGGCGAGCTGGTGGAGGACTGCGTGGGGAGCGACGTGCGGGGGGGGG
ACGCCACCATGTAG
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