Gvermi6983.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6983.t1
Unique NameGvermi6983.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length391
Homology
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A2V3J4F3_9FLOR (NEP1-interacting protein-like 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4F3_9FLOR)

HSP 1 Score: 263 bits (671), Expect = 3.310e-81
Identity = 169/336 (50.30%), Postives = 210/336 (62.50%), Query Frame = 0
Query:   56 VALRRWEIDHAAPERLVYRVAAQPAQHTLTLQANPAQYADAITSLRAAGSLPPD---PPHRQPSLHPP--------VTKPPPTSNDSVTTAAELPKILVAIPPAESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRKRKRSNNHLSLT-MGADR-PVSLQPTRPPRSNDRGENNSLHNTMSRDKSSFLSRQSDDTSLDRFNSDTTIQMDEHATAELLSQVRSALRGQSSLLSLGTSSCVAPSDTLASQRFLLDTLPNPSHAPGSTDQRP-EHT-TLSCGDATDAPPSSSHHLASAPLDMAPNEREPPLDFEAITPAP 376
            VALRRWEID+AAPE LV+RV + P Q+TLTL++NP  Y  A+T+LR AG LPPD   PP    S  P           +P P S D+  ++ +LP++LVAIPP E++CVICLEPI VG  +R+LPC HIYHSQCIRIWLRRKNACPC                       +DR P  +QP   PR +DRGE N+LH T+SR+KSSFLSRQSDD SLDRFNSDTT Q+DE    ELLSQVR ALRGQSS+LS+GT+    PSDT  S + +  + PN      S  + P EH  T +      +  + S    + P + AP   +  +D EAI+PAP
Sbjct:   56 VALRRWEIDNAAPEALVHRVVSNPNQYTLTLKSNPDLYIKAVTALRTAGHLPPDLVQPPETTESTVPTEXXXXXXXXXEPXPIS-DTAPSSGQLPRVLVAIPPTETNCVICLEPIIVGQRVRSLPCHHIYHSQCIRIWLRRKNACPCXXXXXXXXXXXXXXXXXXXXXQTSDRQPTLVQPI--PRFDDRGERNALHATLSRNKSSFLSRQSDDISLDRFNSDTTSQLDEQTAEELLSQVRRALRGQSSMLSIGTTCSATPSDTAPSHQLV--SAPNECVINLSDFETPSEHAETAAANRFLHSISARSVGSINEPTEAAPPVADVAVDIEAISPAP 386          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A163JYT2_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JYT2_ABSGL)

HSP 1 Score: 66.6 bits (161), Expect = 3.750e-8
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0
Query:  152 CVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNAC-PCC 192
            CVICLEP AV  T+RTLPCDH YH  CI +WL +KNAC P C
Sbjct:  807 CVICLEPFAVDDTLRTLPCDHEYHRDCIDVWLTKKNACCPLC 848          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A7S1GI03_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI03_CYCTE)

HSP 1 Score: 63.2 bits (152), Expect = 1.470e-7
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 0
Query:  149 ESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRKRKRSNNH 207
            E++C IC  P+  G  +  LPCDHIYH +C++ WL R+NACP C  +  +  R  +N+H
Sbjct:  176 ENTCTICFAPLEDGDRVGELPCDHIYHVECLKTWLPRRNACPLCATQAAS-PRYENNSH 233          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A5BJX3_VITVI (RING-type E3 ubiquitin transferase n=5 Tax=Vitis TaxID=3603 RepID=A5BJX3_VITVI)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-7
Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = 0
Query:  125 PPTSNDSVTTAAELPKILVAIPPAESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRV 196
            PP + DS   A    KI       +S C +C E   VG  +R LPC+H+YHS CI  WL+  N+CP C H V
Sbjct:  209 PPPAPDSAINAMPTVKITPTHLINDSHCPVCKEEFKVGEEVRELPCNHVYHSDCIVPWLQLHNSCPVCRHEV 280          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A5B7BKR2_DAVIN (Putative E3 ubiquitin-protein ligase RING1 isoform X2 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BKR2_DAVIN)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-7
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 0
Query:  152 CVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRV 196
            C +C E   VG  +R LPC+HIYHS CI  WLR  N+CP C H +
Sbjct:   14 CPVCKEEFTVGEEVRELPCNHIYHSDCIVPWLRLHNSCPVCRHEL 58          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A1U8LJM1_GOSHI (E3 ubiquitin-protein ligase RING1-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8LJM1_GOSHI)

HSP 1 Score: 62.4 bits (150), Expect = 2.990e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 0
Query:  126 PTSNDSVTTAAELPKILVAIPPAESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRV 196
            P +++S   A    KI  +   ++S C +C E   VG   R LPC+HIYHS CI  WLR  N CP C H +
Sbjct:  171 PPASESTIDAIPTVKITESHLRSDSQCPVCKEKFKVGEEARELPCNHIYHSDCIVPWLRLHNTCPVCRHEL 241          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A0A9N558_ARUDO (RING-type domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9N558_ARUDO)

HSP 1 Score: 58.9 bits (141), Expect = 3.910e-7
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0
Query:  149 ESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRV 196
            E +C +CLE +AVG  +R+LPC H +H  CI  WLR++  CP C H+V
Sbjct:   63 ELTCSVCLEQVAVGDLLRSLPCLHQFHVNCIDPWLRQQGTCPVCKHQV 110          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A7S0FBB7_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FBB7_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 4.480e-7
Identity = 32/79 (40.51%), Postives = 40/79 (50.63%), Query Frame = 0
Query:  149 ESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRKRKRSNNHLSLTMGADRPVSLQPTRPPR 227
            +S C++C+E  A G  +RTLPC H YH QCI  WL R   CP C H +            +  + A  PV  QP R PR
Sbjct:  398 DSQCMVCMEGFANGDQLRTLPCLHRYHRQCIDEWLSRSPECPICKHDIT-----------AAVLLAGSPVQAQPKRLPR 465          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A8B8JCZ4_ABRPR (RING-type E3 ubiquitin transferase n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JCZ4_ABRPR)

HSP 1 Score: 62.0 bits (149), Expect = 5.040e-7
Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 0
Query:  124 PPPTSNDSVTTAAELPKILVAIPPAESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRKRKRSNNHLSLTMGADRPVSLQPTRPPRSNDRGENNSLHNTMSRDKSSFL 249
            PPP +  S+     + KI  A   ++S C +C E   +G   R +PC+HIYHS CI  WL + N+CP C      R     + H+S   G         +     + RG+ NS  N   R++ SFL
Sbjct:  173 PPPAARSSIDAMPTI-KITQAHLRSDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVC------RVELPPHGHVSSRSGRSWGGRNSNSNSXDGSSRGQENSHQNHGRRNRLSFL 291          
BLAST of Gvermi6983.t1 vs. uniprot
Match: A0A446S883_TRITD (RING-type domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446S883_TRITD)

HSP 1 Score: 57.8 bits (138), Expect = 5.530e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:  149 ESSCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFN 198
            E +C +CLE +  G  +R+LPC H +H  CI  WLR++  CP C H+V N
Sbjct:   40 ELTCSVCLEQVVAGDLLRSLPCLHQFHVNCIDPWLRQQGTCPICKHQVSN 89          
The following BLAST results are available for this feature:
BLAST of Gvermi6983.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4F3_9FLOR3.310e-8150.30NEP1-interacting protein-like 1 n=1 Tax=Gracilario... [more]
A0A163JYT2_ABSGL3.750e-869.05Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A7S1GI03_CYCTE1.470e-744.07Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A5BJX3_VITVI1.630e-743.06RING-type E3 ubiquitin transferase n=5 Tax=Vitis T... [more]
A0A5B7BKR2_DAVIN1.870e-753.33Putative E3 ubiquitin-protein ligase RING1 isoform... [more]
A0A1U8LJM1_GOSHI2.990e-742.25E3 ubiquitin-protein ligase RING1-like n=1 Tax=Gos... [more]
A0A0A9N558_ARUDO3.910e-750.00RING-type domain-containing protein n=2 Tax=Arundo... [more]
A0A7S0FBB7_9DINO4.480e-740.51Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A8B8JCZ4_ABRPR5.040e-732.54RING-type E3 ubiquitin transferase n=1 Tax=Abrus p... [more]
A0A446S883_TRITD5.530e-746.00RING-type domain-containing protein n=1 Tax=Tritic... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 152..192
e-value: 2.1E-5
score: 34.0
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 152..179
e-value: 6.6E-10
score: 38.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 152..192
score: 11.574592
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 123..197
e-value: 1.6E-15
score: 58.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..131
NoneNo IPR availablePANTHERPTHR14155:SF296RING-H2 FINGER PROTEIN ATL57coord: 12..228
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 12..228
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..390
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 152..192
e-value: 7.23525E-15
score: 66.1713
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 149..206
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:828572..829744 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6983.t1Gvermi6983.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 828572..829744 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=391bp
MSKDAVVYVVVALAIALAALVLLTFVFFQRRRQRAMLLLALAQEDAERRR
RKKRKVALRRWEIDHAAPERLVYRVAAQPAQHTLTLQANPAQYADAITSL
RAAGSLPPDPPHRQPSLHPPVTKPPPTSNDSVTTAAELPKILVAIPPAES
SCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRK
RKRSNNHLSLTMGADRPVSLQPTRPPRSNDRGENNSLHNTMSRDKSSFLS
RQSDDTSLDRFNSDTTIQMDEHATAELLSQVRSALRGQSSLLSLGTSSCV
APSDTLASQRFLLDTLPNPSHAPGSTDQRPEHTTLSCGDATDAPPSSSHH
LASAPLDMAPNEREPPLDFEAITPAPPPSETITSEALGNT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD