Gvermi6983.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6983.t1
Unique Name	Gvermi6983.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:828572..829744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA07G16151.1
PFAMs	DUF1117,zf-RING_2,zinc_ribbon_9
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11982
Evalue	2.15e-09
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,37NKN@33090\|Viridiplantae,3GD8C@35493\|Streptophyta,4JTAT@91835\|fabids
EC	2.3.2.27
Description	E3 ubiquitin-protein ligase RING1-like
COG category	O
BRITE	ko00000,ko01000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6983	Gvermi6983	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 828572..829744 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6983.t1.start1	Gvermi6983.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 828572..828574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6983.t1.CDS1	Gvermi6983.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 828572..829744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6983.t1.exon1	Gvermi6983.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 828572..829744 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6983.t1.stop1	Gvermi6983.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 829742..829744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6983.t1	Gvermi6983.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 828572..829744 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:828572..829744+
coding sequence from alignment at ScGOVlb_24229:828572..829744+

mRNA sequence

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=391bp
MSKDAVVYVVVALAIALAALVLLTFVFFQRRRQRAMLLLALAQEDAERRR
RKKRKVALRRWEIDHAAPERLVYRVAAQPAQHTLTLQANPAQYADAITSL
RAAGSLPPDPPHRQPSLHPPVTKPPPTSNDSVTTAAELPKILVAIPPAES
SCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRK
RKRSNNHLSLTMGADRPVSLQPTRPPRSNDRGENNSLHNTMSRDKSSFLS
RQSDDTSLDRFNSDTTIQMDEHATAELLSQVRSALRGQSSLLSLGTSSCV
APSDTLASQRFLLDTLPNPSHAPGSTDQRPEHTTLSCGDATDAPPSSSHH
LASAPLDMAPNEREPPLDFEAITPAPPPSETITSEALGNT*

spliced messenger RNA

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_24229:828572..829744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAAGACGCCGTGGTGTACGTAGTCGTCGCCCTGGCCATCGCCCT
GGCCGCGCTCGTGCTTCTCACCTTCGTGTTCTTCCAGCGGCGGCGCCAGC
GCGCCATGCTGCTGCTGGCGCTCGCACAGGAGGACGCCGAGCGCCGCCGC
CGCAAGAAGAGAAAGGTCGCCCTGCGTCGCTGGGAAATAGACCACGCCGC
CCCCGAGCGCCTCGTCTATCGCGTCGCCGCGCAGCCGGCCCAGCACACCC
TCACGCTGCAGGCCAACCCCGCGCAGTACGCCGACGCCATCACCTCTCTT
CGCGCCGCCGGCAGCTTGCCCCCCGACCCGCCCCACCGCCAGCCTTCACT
GCACCCGCCCGTCACAAAGCCCCCGCCAACCTCCAACGACTCCGTCACCA
CTGCCGCTGAGCTGCCCAAAATATTGGTCGCCATCCCGCCCGCAGAGTCC
AGCTGCGTCATCTGCCTCGAGCCCATCGCCGTCGGCCACACGATAAGAAC
GCTCCCTTGCGACCACATCTACCACAGCCAGTGCATCCGCATCTGGTTGC
GCCGCAAGAACGCCTGCCCGTGTTGCTGTCACCGCGTCTTCAATCGCAAG
AGAAAGCGATCCAACAACCACCTGTCGCTCACCATGGGCGCCGATCGTCC
GGTGTCGCTGCAGCCCACGCGCCCGCCAAGATCAAACGACCGAGGCGAAA
ACAACTCTTTGCACAACACCATGTCGCGAGACAAGAGCAGCTTTCTTTCG
CGCCAGTCGGATGACACCAGTCTGGACCGCTTCAACTCGGACACCACCAT
TCAGATGGACGAGCATGCCACGGCCGAGTTGCTATCGCAGGTGCGCAGTG
CGTTGCGCGGCCAGTCTTCCTTGCTTAGCTTGGGCACCTCGAGTTGCGTC
GCACCCTCCGACACACTCGCATCCCAGCGCTTTCTGTTGGACACGCTCCC
GAACCCGTCTCATGCGCCTGGCTCCACCGATCAGCGCCCGGAACACACCA
CGCTATCGTGTGGAGACGCAACCGACGCACCGCCATCCTCCTCTCACCAT
CTCGCCTCTGCGCCGCTTGACATGGCGCCGAACGAAAGGGAGCCACCCCT
GGATTTCGAGGCAATCACACCCGCACCGCCTCCCTCGGAGACCATCACAT
CGGAAGCTCTTGGTAACACATAG

protein sequence of Gvermi6983.t1

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=391bp
MSKDAVVYVVVALAIALAALVLLTFVFFQRRRQRAMLLLALAQEDAERRR
RKKRKVALRRWEIDHAAPERLVYRVAAQPAQHTLTLQANPAQYADAITSL
RAAGSLPPDPPHRQPSLHPPVTKPPPTSNDSVTTAAELPKILVAIPPAES
SCVICLEPIAVGHTIRTLPCDHIYHSQCIRIWLRRKNACPCCCHRVFNRK
RKRSNNHLSLTMGADRPVSLQPTRPPRSNDRGENNSLHNTMSRDKSSFLS
RQSDDTSLDRFNSDTTIQMDEHATAELLSQVRSALRGQSSLLSLGTSSCV
APSDTLASQRFLLDTLPNPSHAPGSTDQRPEHTTLSCGDATDAPPSSSHH
LASAPLDMAPNEREPPLDFEAITPAPPPSETITSEALGNT*

mRNA from alignment at ScGOVlb_24229:828572..829744+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_24229:828572..829744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAAAGACGCCGTGGTGTACGTAGTCGTCGCCCTGGCCATCGCCCT
GGCCGCGCTCGTGCTTCTCACCTTCGTGTTCTTCCAGCGGCGGCGCCAGC
GCGCCATGCTGCTGCTGGCGCTCGCACAGGAGGACGCCGAGCGCCGCCGC
CGCAAGAAGAGAAAGGTCGCCCTGCGTCGCTGGGAAATAGACCACGCCGC
CCCCGAGCGCCTCGTCTATCGCGTCGCCGCGCAGCCGGCCCAGCACACCC
TCACGCTGCAGGCCAACCCCGCGCAGTACGCCGACGCCATCACCTCTCTT
CGCGCCGCCGGCAGCTTGCCCCCCGACCCGCCCCACCGCCAGCCTTCACT
GCACCCGCCCGTCACAAAGCCCCCGCCAACCTCCAACGACTCCGTCACCA
CTGCCGCTGAGCTGCCCAAAATATTGGTCGCCATCCCGCCCGCAGAGTCC
AGCTGCGTCATCTGCCTCGAGCCCATCGCCGTCGGCCACACGATAAGAAC
GCTCCCTTGCGACCACATCTACCACAGCCAGTGCATCCGCATCTGGTTGC
GCCGCAAGAACGCCTGCCCGTGTTGCTGTCACCGCGTCTTCAATCGCAAG
AGAAAGCGATCCAACAACCACCTGTCGCTCACCATGGGCGCCGATCGTCC
GGTGTCGCTGCAGCCCACGCGCCCGCCAAGATCAAACGACCGAGGCGAAA
ACAACTCTTTGCACAACACCATGTCGCGAGACAAGAGCAGCTTTCTTTCG
CGCCAGTCGGATGACACCAGTCTGGACCGCTTCAACTCGGACACCACCAT
TCAGATGGACGAGCATGCCACGGCCGAGTTGCTATCGCAGGTGCGCAGTG
CGTTGCGCGGCCAGTCTTCCTTGCTTAGCTTGGGCACCTCGAGTTGCGTC
GCACCCTCCGACACACTCGCATCCCAGCGCTTTCTGTTGGACACGCTCCC
GAACCCGTCTCATGCGCCTGGCTCCACCGATCAGCGCCCGGAACACACCA
CGCTATCGTGTGGAGACGCAACCGACGCACCGCCATCCTCCTCTCACCAT
CTCGCCTCTGCGCCGCTTGACATGGCGCCGAACGAAAGGGAGCCACCCCT
GGATTTCGAGGCAATCACACCCGCACCGCCTCCCTCGGAGACCATCACAT
CGGAAGCTCTTGGTAACACATAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:828572..829744+

>Gvermi6983.t1 ID=Gvermi6983.t1|Name=Gvermi6983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1173bp|location=Sequence derived from alignment at ScGOVlb_24229:828572..829744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAAAGACGCCGTGGTGTACGTAGTCGTCGCCCTGGCCATCGCCCT
GGCCGCGCTCGTGCTTCTCACCTTCGTGTTCTTCCAGCGGCGGCGCCAGC
GCGCCATGCTGCTGCTGGCGCTCGCACAGGAGGACGCCGAGCGCCGCCGC
CGCAAGAAGAGAAAGGTCGCCCTGCGTCGCTGGGAAATAGACCACGCCGC
CCCCGAGCGCCTCGTCTATCGCGTCGCCGCGCAGCCGGCCCAGCACACCC
TCACGCTGCAGGCCAACCCCGCGCAGTACGCCGACGCCATCACCTCTCTT
CGCGCCGCCGGCAGCTTGCCCCCCGACCCGCCCCACCGCCAGCCTTCACT
GCACCCGCCCGTCACAAAGCCCCCGCCAACCTCCAACGACTCCGTCACCA
CTGCCGCTGAGCTGCCCAAAATATTGGTCGCCATCCCGCCCGCAGAGTCC
AGCTGCGTCATCTGCCTCGAGCCCATCGCCGTCGGCCACACGATAAGAAC
GCTCCCTTGCGACCACATCTACCACAGCCAGTGCATCCGCATCTGGTTGC
GCCGCAAGAACGCCTGCCCGTGTTGCTGTCACCGCGTCTTCAATCGCAAG
AGAAAGCGATCCAACAACCACCTGTCGCTCACCATGGGCGCCGATCGTCC
GGTGTCGCTGCAGCCCACGCGCCCGCCAAGATCAAACGACCGAGGCGAAA
ACAACTCTTTGCACAACACCATGTCGCGAGACAAGAGCAGCTTTCTTTCG
CGCCAGTCGGATGACACCAGTCTGGACCGCTTCAACTCGGACACCACCAT
TCAGATGGACGAGCATGCCACGGCCGAGTTGCTATCGCAGGTGCGCAGTG
CGTTGCGCGGCCAGTCTTCCTTGCTTAGCTTGGGCACCTCGAGTTGCGTC
GCACCCTCCGACACACTCGCATCCCAGCGCTTTCTGTTGGACACGCTCCC
GAACCCGTCTCATGCGCCTGGCTCCACCGATCAGCGCCCGGAACACACCA
CGCTATCGTGTGGAGACGCAACCGACGCACCGCCATCCTCCTCTCACCAT
CTCGCCTCTGCGCCGCTTGACATGGCGCCGAACGAAAGGGAGCCACCCCT
GGATTTCGAGGCAATCACACCCGCACCGCCTCCCTCGGAGACCATCACAT
CGGAAGCTCTTGGTAACACATAG