Gvermi6975.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6975.t1
Unique NameGvermi6975.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Homology
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A2V3J4H8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H8_9FLOR)

HSP 1 Score: 181 bits (458), Expect = 2.000e-55
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 0
Query:    9 FLSLAIVLQTIQAC---------RVVTVNPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGNPAATLVSTQSLAFEGLLVEIELDAAIPRYFARRLKC 160
            FL+L     T QA          RV  +NPPTLFDP+P GFS I VD    VAHVAGQVAIN  G  +G+TLAEQL+ETERN+  AL+AV +D S+I R+N FILNFDP TDLS    TGKRLG+P  TL+ST +LA EGLLVEIELDA + R F RRL C
Sbjct:    8 FLALIFCFHTTQATWFCLRTNNKRVRIINPPTLFDPVPFGFSHIAVDTKNFVAHVAGQVAINQTGAIIGDTLAEQLVETERNLLFALDAVEADISDITRVNAFILNFDPRTDLSTFMMTGKRLGSPVTTLISTGALAIEGLLVEIELDAVVSRSFVRRLIC 168          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A2V3IR41_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR41_9FLOR)

HSP 1 Score: 134 bits (336), Expect = 6.840e-37
Identity = 73/144 (50.69%), Postives = 96/144 (66.67%), Query Frame = 0
Query:   20 QACRVVTVNPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGNPA--ATLVSTQSLAFEGLLVEIELDAAIPRYFARRLKCT 161
            Q  R+V +NPPTL DP+P G+SQI VD   AVAHVAGQ AIN  G+ VGET AEQL +T RN++LALEAV +D ++IL+  +  ++ DP T   IL  +    G PA    + S+ SL   G+LVEI++D A+P  F RRL C+
Sbjct:   29 QRRRLVRINPPTLLDPVPFGYSQIVVDTRNAVAHVAGQNAINQTGSLVGETFAEQLEQTLRNVELALEAVEADINDILKSILITVDLDPSTAEDILAASLMNAGGPAPPGIVFSSDSLLEPGVLVEIQVDVAVPESFVRRLVCS 172          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A6L8VKW1_9RHOB (RidA family protein n=1 Tax=Frigidibacter albus TaxID=1465486 RepID=A0A6L8VKW1_9RHOB)

HSP 1 Score: 71.2 bits (173), Expect = 7.160e-13
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   23 RVVTVNPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGN--PAATLVSTQSLAFEGLLVEIELDAAI 150
            ++  +NPPTL D  PLG+SQ+ +     +  ++GQVA +V+G+ V   LA+Q+    RN   ALEA  +   N++ L +++++ DPE   +++       G   PA T +   +LA     +EIE  A I
Sbjct:    4 KIQKLNPPTLPDAAPLGYSQVAIAAPGRMVFISGQVAASVDGSPVPPGLADQVTIVLRNFASALEAAGATPDNVVSLRIYVVDLDPEGVGALMAPLAAMFGGQAPALTGIGVNALASPEFKIEIEAVAVI 133          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A151Y0J7_9GAMM (YjgF family translation initiation inhibitor n=1 Tax=Acinetobacter pragensis TaxID=1806892 RepID=A0A151Y0J7_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 1.840e-11
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   28 NPPTLFDPIPLGFSQIRVDR-LTAVAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETD---LSILQETGKRLGNPAATLVSTQSLAFEGLLVEIELDA 148
            NP TL++P P G+S + V R +  V H++GQ   N  G  + E   +QL +  RN++LAL+A  +   +I  L V I +++P+     +  +Q+     G PA TL+    LA  G+ +EIE  A
Sbjct:    9 NPDTLYNPQPYGYSHVAVIRQMQKVVHISGQGGENSQGQ-LPEHFEQQLHQAFRNLQLALQAADAQLQDIAVLRVLITDYNPQKHQLLIQRMQQLWTDQGFPACTLIPVPCLALAGMQIEIEATA 132          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A5C8P6D2_9BURK (RidA family protein n=2 Tax=Zeimonas arvi TaxID=2498847 RepID=A0A5C8P6D2_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 7.150e-11
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   53 HVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGN--PAATLVSTQSLAFEGLLVEIELDAAI 150
            +V+GQVA + +G  VG T AEQ      N+++AL A  + FS+I+++NV++ +   E    + +  G+ LG   PA+TLV+T +L  E L++E+E+ A +
Sbjct:   93 YVSGQVAFDESGKVVGATFAEQAERVFHNLRIALAAGGAQFSDIVKMNVYVRDLTSEKVRCLREIRGRHLGGHKPASTLVATPALVHEDLMLEVEVVAVV 192          
BLAST of Gvermi6975.t1 vs. uniprot
Match: G8PW32_PSEUV (Endoribonuclease L-PSP n=4 Tax=Pseudovibrio TaxID=258255 RepID=G8PW32_PSEUV)

HSP 1 Score: 66.2 bits (160), Expect = 1.180e-10
Identity = 41/136 (30.15%), Postives = 74/136 (54.41%), Query Frame = 0
Query:   20 QACRVVTVNPPTLFDPIPLGFSQIRVDRLTA-VAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGN--PAATLVSTQSLAFEGLLVEIELDAAIPR 152
            QA  +  +NPPT+ D  P GFSQ+ V   +A   +++GQ + +  G  +G+T+ +Q      N++ A+EA      +++++ V +     +   +I ++  K  G   PA+TL+    LA +G+L EI+   AIP+
Sbjct:   29 QAEGLERINPPTIVDTSPWGFSQVVVAPSSAKTVYISGQFSGDKEGNVLGKTVGKQAELAFDNLRKAIEASGGQPEHVVKIQVLVAGHGEDKLHAIGEQISKLFGEHLPASTLIPVDRLALDGMLFEIDATLAIPQ 164          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A3M0MAQ8_9RHOB (RidA family protein n=1 Tax=Paracoccus alkanivorans TaxID=2116655 RepID=A0A3M0MAQ8_9RHOB)

HSP 1 Score: 65.1 bits (157), Expect = 1.590e-10
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 0
Query:   27 VNPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGNP---AATLVSTQSLAFEGLLVEIELDAAI 150
            +NP TLFDP P GFS +       + ++AGQ   N NG       A Q+ +   N+  A+ A   D S++++++ FI++ D ET L +L +  + L  P   A TLV    LA +G+L E+E  A +
Sbjct:    6 INPETLFDPEPFGFSHVVSAPSGRLVYIAGQGGENRNGVLASGFEA-QVGQAFSNLATAMSAAGVDPSHVVKISTFIVDHD-ETKLGLLTDAVRDLFGPSLPAQTLVPVTRLALDGMLFEVEAIAVV 130          
BLAST of Gvermi6975.t1 vs. uniprot
Match: Q5WI83_ALKCK (Translation initiation inhibitor n=27 Tax=Bacillales TaxID=1385 RepID=Q5WI83_ALKCK)

HSP 1 Score: 64.3 bits (155), Expect = 3.270e-10
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   28 NPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGE-TLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGNP-----AATLVSTQSLAFEGLLVEIELDAAIP 151
            NP TL D +    S + V   + +A ++GQV+++  G+ +G      Q ++   N+K ALEAV ++   I ++N+F++N +PE  +SI+ E G  +  P     A+T +  Q+LA    L+EI+     P
Sbjct:    5 NPKTLTDKVTSVISHVVVTTASKLAFISGQVSVDETGSLIGSGDYYTQAIQVFTNLKYALEAVRANPLYIAKMNIFVVNHNPEL-ISIIFEAGFHVFGPNWPKTASTYIGVQALADPEWLIEIDAIVIFP 133          
BLAST of Gvermi6975.t1 vs. uniprot
Match: UPI0007AE5EF5 (RidA family protein n=4 Tax=Pseudovibrio TaxID=258255 RepID=UPI0007AE5EF5)

HSP 1 Score: 64.7 bits (156), Expect = 3.860e-10
Identity = 37/129 (28.68%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   27 VNPPTLFDPIPLGFSQIRVDRLTA-VAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGN--PAATLVSTQSLAFEGLLVEIELDAAIPR 152
            +NP T+FD  P GF+Q+ V    A   +++GQ + +++G  +G+T+ +Q      N++ A+ A      +++++ V +     +   +I ++  K  G   PA+TL+    LA +G+L EI+   AIP+
Sbjct:   28 INPSTIFDTSPWGFTQVVVAPSNAKTVYISGQFSGDIDGNVLGKTVGKQAEIAFSNLRKAIAASGGKPEHVVKIKVLVTGHGEDKLHAIKEQADKLFGQHLPASTLIPVDRLALDGMLFEIDATLAIPQ 156          
BLAST of Gvermi6975.t1 vs. uniprot
Match: A0A1C2DJV4_9HYPH (Enamine deaminase RidA n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A1C2DJV4_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 4.590e-10
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   27 VNPPTLFDPIPLGFSQIRVDRLTAVAHVAGQVAINVNGTFVGE-TLAEQLLETERNIKLALEAVHSDFSNILRLNVFILNFDPETDLSILQETGKRLGN--PAA-TLVSTQSLAFEGLLVEIELDAAI 150
            +NP +++  +P GFS           H+AGQVA N  G  VG   LA Q  +   N+K  L  V +  ++++RL  +++N  P+    I  E     G+  PAA TL+  Q+LA    L+EIE  AA+
Sbjct:    6 INPDSMYQSLPFGFSHAVEQNSGRTLHLAGQVAWNSAGELVGPGDLATQARQALANLKAVLAEVGAMPADVVRLRTYVVNHTPDKLGPITAEIAAFFGDAAPAANTLIGVQTLAMPEFLIEIEATAAL 133          
The following BLAST results are available for this feature:
BLAST of Gvermi6975.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4H8_9FLOR2.000e-5560.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IR41_9FLOR6.840e-3750.69Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6L8VKW1_9RHOB7.160e-1333.08RidA family protein n=1 Tax=Frigidibacter albus Ta... [more]
A0A151Y0J7_9GAMM1.840e-1134.40YjgF family translation initiation inhibitor n=1 T... [more]
A0A5C8P6D2_9BURK7.150e-1137.00RidA family protein n=2 Tax=Zeimonas arvi TaxID=24... [more]
G8PW32_PSEUV1.180e-1030.15Endoribonuclease L-PSP n=4 Tax=Pseudovibrio TaxID=... [more]
A0A3M0MAQ8_9RHOB1.590e-1034.65RidA family protein n=1 Tax=Paracoccus alkanivoran... [more]
Q5WI83_ALKCK3.270e-1031.54Translation initiation inhibitor n=27 Tax=Bacillal... [more]
UPI0007AE5EF53.860e-1028.68RidA family protein n=4 Tax=Pseudovibrio TaxID=258... [more]
A0A1C2DJV4_9HYPH4.590e-1034.38Enamine deaminase RidA n=5 Tax=Mesorhizobium TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 24..154
e-value: 1.3E-15
score: 59.3
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 25..151
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 48..149
e-value: 6.9E-14
score: 51.9
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR118032-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDAcoord: 17..151
NoneNo IPR availablePANTHERPTHR11803:SF34BLL5130 PROTEINcoord: 17..151
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 40..148
e-value: 2.4434E-13
score: 60.6499

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:792643..793128 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1Gvermi6975.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 792643..793128 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MQFHRFLTFLSLAIVLQTIQACRVVTVNPPTLFDPIPLGFSQIRVDRLTA
VAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLN
VFILNFDPETDLSILQETGKRLGNPAATLVSTQSLAFEGLLVEIELDAAI
PRYFARRLKCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR006175YjgF/YER057c/UK114