Gvermi6975.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6975.t1
Unique NameGvermi6975.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:792643..793128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog466088.CL42_03685
PFAMsRibonuc_L-PSP
Max annot lvl1236|Gammaproteobacteria
Evalue8.5e-15
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,1RK2W@1224|Proteobacteria,1SEJ6@1236|Gammaproteobacteria,3NTCY@468|Moraxellaceae
Descriptionendoribonuclease L-PSP
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6975Gvermi6975Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 792643..793128 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1.start1Gvermi6975.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 792643..792645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1.CDS1Gvermi6975.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 792643..793128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1.exon1Gvermi6975.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 792643..793128 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1.stop1Gvermi6975.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 793126..793128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6975.t1Gvermi6975.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 792643..793128 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=162bp
MQFHRFLTFLSLAIVLQTIQACRVVTVNPPTLFDPIPLGFSQIRVDRLTA
VAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLN
VFILNFDPETDLSILQETGKRLGNPAATLVSTQSLAFEGLLVEIELDAAI
PRYFARRLKCT*
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spliced messenger RNA

>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_24229:792643..793128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCCATCGCTTTCTTACCTTCCTTTCCCTCGCCATCGTGCTTCA
AACTATCCAAGCTTGTCGCGTTGTTACGGTCAATCCGCCAACTTTGTTCG
ACCCAATTCCTCTCGGTTTTTCTCAAATTAGAGTCGACAGGTTGACTGCA
GTGGCGCATGTCGCCGGACAGGTCGCCATCAATGTAAATGGTACCTTTGT
CGGCGAAACTCTCGCTGAGCAGCTCCTGGAGACCGAGCGCAATATTAAAC
TAGCCCTGGAGGCCGTACATTCCGATTTCAGTAATATTCTTCGTCTCAAT
GTGTTCATTCTCAACTTTGATCCGGAAACTGACCTCTCAATTTTGCAAGA
AACTGGAAAAAGACTGGGGAACCCGGCAGCAACTCTTGTTTCTACTCAAT
CTCTTGCTTTCGAGGGTTTGCTTGTTGAAATTGAGCTAGACGCAGCTATT
CCGAGGTATTTCGCTAGACGTCTGAAATGTACTTGA
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protein sequence of Gvermi6975.t1

>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MQFHRFLTFLSLAIVLQTIQACRVVTVNPPTLFDPIPLGFSQIRVDRLTA
VAHVAGQVAINVNGTFVGETLAEQLLETERNIKLALEAVHSDFSNILRLN
VFILNFDPETDLSILQETGKRLGNPAATLVSTQSLAFEGLLVEIELDAAI
PRYFARRLKCT*
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mRNA from alignment at ScGOVlb_24229:792643..793128+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_24229:792643..793128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTCCATCGCTTTCTTACCTTCCTTTCCCTCGCCATCGTGCTTCA
AACTATCCAAGCTTGTCGCGTTGTTACGGTCAATCCGCCAACTTTGTTCG
ACCCAATTCCTCTCGGTTTTTCTCAAATTAGAGTCGACAGGTTGACTGCA
GTGGCGCATGTCGCCGGACAGGTCGCCATCAATGTAAATGGTACCTTTGT
CGGCGAAACTCTCGCTGAGCAGCTCCTGGAGACCGAGCGCAATATTAAAC
TAGCCCTGGAGGCCGTACATTCCGATTTCAGTAATATTCTTCGTCTCAAT
GTGTTCATTCTCAACTTTGATCCGGAAACTGACCTCTCAATTTTGCAAGA
AACTGGAAAAAGACTGGGGAACCCGGCAGCAACTCTTGTTTCTACTCAAT
CTCTTGCTTTCGAGGGTTTGCTTGTTGAAATTGAGCTAGACGCAGCTATT
CCGAGGTATTTCGCTAGACGTCTGAAATGTACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:792643..793128+

>Gvermi6975.t1 ID=Gvermi6975.t1|Name=Gvermi6975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=486bp|location=Sequence derived from alignment at ScGOVlb_24229:792643..793128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTCCATCGCTTTCTTACCTTCCTTTCCCTCGCCATCGTGCTTCA
AACTATCCAAGCTTGTCGCGTTGTTACGGTCAATCCGCCAACTTTGTTCG
ACCCAATTCCTCTCGGTTTTTCTCAAATTAGAGTCGACAGGTTGACTGCA
GTGGCGCATGTCGCCGGACAGGTCGCCATCAATGTAAATGGTACCTTTGT
CGGCGAAACTCTCGCTGAGCAGCTCCTGGAGACCGAGCGCAATATTAAAC
TAGCCCTGGAGGCCGTACATTCCGATTTCAGTAATATTCTTCGTCTCAAT
GTGTTCATTCTCAACTTTGATCCGGAAACTGACCTCTCAATTTTGCAAGA
AACTGGAAAAAGACTGGGGAACCCGGCAGCAACTCTTGTTTCTACTCAAT
CTCTTGCTTTCGAGGGTTTGCTTGTTGAAATTGAGCTAGACGCAGCTATT
CCGAGGTATTTCGCTAGACGTCTGAAATGTACTTGA
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