Gvermi6959.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6959.t1
Unique NameGvermi6959.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Homology
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A2V3J4M8_9FLOR (Transmembrane protein 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4M8_9FLOR)

HSP 1 Score: 209 bits (531), Expect = 9.750e-65
Identity = 105/146 (71.92%), Postives = 125/146 (85.62%), Query Frame = 0
Query:   96 MENIGPVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRREALM 241
            M ++GP+ELVYSVV +VLD+VQ  AH+  +S+F+ SV W+EPFIRGIIG+QF+LFMV Y TRRNDI QF IL  LT  +L AERLN+YGR +W++FASQNYFDR G FMLAFV GPFIILANFI+IGMFLRLVKLYA+RKRREA+M
Sbjct:    1 MNDVGPLELVYSVVGNVLDSVQQAAHMHSISDFIGSVRWEEPFIRGIIGLQFILFMVAYVTRRNDIVQFIILSCLTLIALAAERLNDYGRANWRHFASQNYFDRAGLFMLAFVCGPFIILANFIMIGMFLRLVKLYAKRKRREAMM 146          
BLAST of Gvermi6959.t1 vs. uniprot
Match: R7QGC7_CHOCR (Transmembrane protein 18 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGC7_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 4.370e-40
Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 0
Query:  100 GPVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKR 236
            GP++++Y   D+VL   +G+    ++++F  +V W EPFI  ++  Q  LFM+TYATRR +I QF IL  +T  +L AERLN YG++HW  FASQNYFD  G FM+ FVSGPF++LAN IVIGM L+LV LY+RR R
Sbjct:   10 GPLDVIYEAADTVLRNAEGLLGADKLADFFATVRWNEPFILALVLGQIFLFMLTYATRRFEIAQFCILMVITMITLAAERLNMYGKRHWSQFASQNYFDGPGLFMMIFVSGPFVVLANVIVIGMGLKLVHLYSRRVR 146          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A7S0BEK5_9RHOD (Transmembrane protein 18 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEK5_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 2.310e-24
Identity = 53/140 (37.86%), Postives = 89/140 (63.57%), Query Frame = 0
Query:   96 MENIGPVELVYSVVDSVLDAV--QGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYAR 233
            + N+GPVEL+Y + D++L  +  Q  + +  +S+FV+SV+W EPFI G+I  Q ++      +RR  + Q     F+  +   AE LN +GR++W +F++QNYFDRNG F + F +GP +++AN I++ + +R + L  R
Sbjct:   11 LSNMGPVELLYHLADTLLGTMEKQIESPMHLLSDFVESVTWSEPFILGLIVFQIVVLTAVLVSRRKLVLQVVWFVFIAVSVFFAEPLNNWGRQNWPSFSTQNYFDRNGLFAMIFFAGPLLLIANVILVNLSVRTMLLAIR 150          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A5J4YLJ0_PORPP (Transmembrane protein 18 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLJ0_PORPP)

HSP 1 Score: 91.7 bits (226), Expect = 1.130e-18
Identity = 43/136 (31.62%), Postives = 77/136 (56.62%), Query Frame = 0
Query:   98 NIGPVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYAR 233
            ++  +++ Y+  D  LDA+ GV  L  V++FV++V+W EPFI  ++     ++ V +  RR      + +F + A   + ERLN +G  +W  FA+Q+YFD NG F   F + P ++L + ++  +F  + K+  R
Sbjct:   52 DMSAMDVAYAFADDALDALGGVMRLDLVADFVETVTWTEPFIMALLAFHVGMYAVAFLVRRRANAMVAFMFVIAALVFMTERLNTWGAANWTKFATQDYFDSNGLFAFIFYAAPMLLLGHILLFRLFALIAKMAIR 187          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A0D9WGX6_9ORYZ (Transmembrane protein 18 n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WGX6_9ORYZ)

HSP 1 Score: 80.9 bits (198), Expect = 3.530e-15
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 0
Query:  128 FVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRRE 238
            FV +V W EP++  ++    +L +     R+N  FQF +LF   +   LAE++N Y  KHW+N AS+NYFDR G F+    SGP I ++  IV+   + L ++  + KR E
Sbjct:   40 FVRAVDWTEPWLLCLMAFHAILLLTAVGFRKNANFQFFLLFLAYSGVYLAEKINSYMGKHWRNIASRNYFDRAGVFISVVWSGPLIFISMVIVVSSLITLCRMMVKWKRAE 150          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A482SNI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNI2_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.300e-14
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0
Query:  123 QRVSEFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILA 216
            + V  F  ++ WQE FIR +I +  +LF+    TR+N   QF+IL  ++ T   +ER+N +   HW+ FASQNYFD  G F   F++ P + +A
Sbjct:   43 ESVQAFSYAIDWQENFIRSLIAIHVVLFVTVLLTRKNVELQFAILCVISLTVYFSERINAWAGLHWREFASQNYFDHEGVFSGLFLAAPLLFIA 136          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A835PJB9_VANPL (Transmembrane protein 18 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PJB9_VANPL)

HSP 1 Score: 79.3 bits (194), Expect = 1.330e-14
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0
Query:  128 FVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRRE 238
            F  ++ W+EP++  ++   F L +    +R+   FQF +     +   LAER+N +  KHWK+FA QNYFDRNG F+    SGP ++L+  I++   + L KL  + KR E
Sbjct:   40 FFHAIDWKEPWLICLLLFHFTLLVTAIISRKRVNFQFGLSILAFSGVFLAERINGFLGKHWKSFARQNYFDRNGLFISVLWSGPLLLLSIIIIVSTLVSLCKLIVQWKRAE 150          
BLAST of Gvermi6959.t1 vs. uniprot
Match: V7C3L8_PHAVU (Transmembrane protein 18 n=6 Tax=Phaseoleae TaxID=163735 RepID=V7C3L8_PHAVU)

HSP 1 Score: 79.0 bits (193), Expect = 1.850e-14
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 0
Query:  128 FVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSL-LAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRRE 238
            F  ++ W+EP++ G++G    L +V   +R+   FQ   LF LT   + LAE LN +  K+WKNF+ QNYFD +G FM    SGP ++++  I+I     L  L  R KR E
Sbjct:   40 FFHAIDWKEPWLMGLVGFHVALLLVAIISRKKTNFQM-FLFLLTLVGVYLAETLNRFMGKNWKNFSGQNYFDPSGLFMSVLWSGPLLVISMIILINTLFSLCYLIVRWKRAE 150          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A6V2Q1E3_EMIHU (Transmembrane protein 18 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2Q1E3_EMIHU)

HSP 1 Score: 76.6 bits (187), Expect = 1.360e-13
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  128 FVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRRE 238
            FV +V W EP+++G++G+   ++ V   TRR +  Q ++L  +      AERLN  G  HW+ FA+Q+YFD  G F+      P ++ A FI++       +L    KRRE
Sbjct:   32 FVHAVDWTEPWLKGLLGLHLSVWAVVIVTRRVNELQMALLVAILGAVYGAERLNALGAAHWREFATQDYFDERGVFVALLYCTPLLLAAGFILLNALRTTARLLVEVKRRE 142          
BLAST of Gvermi6959.t1 vs. uniprot
Match: A0A1V9ZJI7_9STRA (Transmembrane protein 18 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJI7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.830e-13
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 0
Query:  127 EFVDSVSWQEPFIRGIIGVQFLLFMVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRNGFFMLAFVSGPFII 214
            ++ ++V W EP I G++    LL +   A R+    Q ++  F+  T  L+ERLN  G+ HW+ FA+QNYFD+NG FM  FV+GP ++
Sbjct:   22 QWYEAVDWHEPLIVGLLVFHLLLLVGVLAFRKVYFIQVALFVFICGTIGLSERLNGLGQTHWRVFATQNYFDKNGVFMGIFVAGPLLV 109          
The following BLAST results are available for this feature:
BLAST of Gvermi6959.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4M8_9FLOR9.750e-6571.92Transmembrane protein 18 n=1 Tax=Gracilariopsis ch... [more]
R7QGC7_CHOCR4.370e-4053.28Transmembrane protein 18 n=1 Tax=Chondrus crispus ... [more]
A0A7S0BEK5_9RHOD2.310e-2437.86Transmembrane protein 18 n=2 Tax=Rhodosorus marinu... [more]
A0A5J4YLJ0_PORPP1.130e-1831.62Transmembrane protein 18 n=1 Tax=Porphyridium purp... [more]
A0A0D9WGX6_9ORYZ3.530e-1537.84Transmembrane protein 18 n=1 Tax=Leersia perrieri ... [more]
A0A482SNI2_9ARCH1.300e-1439.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835PJB9_VANPL1.330e-1436.94Transmembrane protein 18 n=1 Tax=Vanilla planifoli... [more]
V7C3L8_PHAVU1.850e-1439.29Transmembrane protein 18 n=6 Tax=Phaseoleae TaxID=... [more]
A0A6V2Q1E3_EMIHU1.360e-1335.14Transmembrane protein 18 n=1 Tax=Emiliania huxleyi... [more]
A0A1V9ZJI7_9STRA1.830e-1340.91Transmembrane protein 18 n=1 Tax=Achlya hypogyna T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026721Transmembrane protein 18PFAMPF14770TMEM18coord: 128..242
e-value: 2.5E-30
score: 104.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..269
NoneNo IPR availablePANTHERPTHR22593:SF2TRANSMEMBRANE PROTEIN 18coord: 121..249
NoneNo IPR availablePANTHERPTHR22593TRANSMEMBRANE PROTEIN 18coord: 121..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 229..269
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..160
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 182..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 201..228
NoneNo IPR availableTMHMMTMhelixcoord: 161..183
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 203..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:750360..751260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1Gvermi6959.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 750360..751260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
LVLTTTDLLSVTYTEHANKNLLQIAFALFAALSATPVIAEVPSCKKFGVV
GKVHVSLLFAYQCKLGFNLKESISGSSSRSPVRIGFFPDRYLWISMENIG
PVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLF
MVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRN
GFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRREALMRRQSTSNRQ
RRAASPSEASAVADRKKSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026721TMEM18