Gvermi6959.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6959.t1
Unique NameGvermi6959.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:750360..751260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008237279.1
PFAMsTMEM18
Max annot lvl35493|Streptophyta
KEGG koko:K22145
KEGG TC9.B.228.1
Evalue4.12e-18
EggNOG OGsKOG1881@1|root,KOG1881@2759|Eukaryota,37TTK@33090|Viridiplantae,3GI1N@35493|Streptophyta,4JP2S@91835|fabids
DescriptionTransmembrane protein 18
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6959Gvermi6959Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 750360..751260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1Gvermi6959.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 750360..751260 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1.start1Gvermi6959.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 750360..750362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1.CDS1Gvermi6959.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 750360..751019 +
Gvermi6959.t1.CDS2Gvermi6959.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 751111..751260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1.exon1Gvermi6959.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 750360..751019 +
Gvermi6959.t1.exon2Gvermi6959.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 751111..751260 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1.intron1Gvermi6959.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 751020..751110 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6959.t1.stop1Gvermi6959.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 751258..751260 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=270bp
LVLTTTDLLSVTYTEHANKNLLQIAFALFAALSATPVIAEVPSCKKFGVV
GKVHVSLLFAYQCKLGFNLKESISGSSSRSPVRIGFFPDRYLWISMENIG
PVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLF
MVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRN
GFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRREALMRRQSTSNRQ
RRAASPSEASAVADRKKSK*
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spliced messenger RNA

>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=810bp|location=Sequence derived from alignment at ScGOVlb_24229:750360..751260+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGTCCTCACGACCACAGATCTCCTCTCCGTGACTTACACTGAGCATGC
GAACAAGAACCTGTTGCAGATTGCGTTTGCATTATTCGCTGCCCTCTCCG
CGACCCCTGTGATAGCCGAGGTGCCTTCTTGCAAAAAATTTGGCGTTGTG
GGGAAGGTTCATGTATCGTTACTGTTCGCATATCAGTGCAAGCTGGGCTT
CAACCTCAAAGAAAGCATTAGTGGTTCGTCATCAAGAAGCCCGGTCAGAA
TAGGCTTTTTCCCCGATCGTTATCTCTGGATCAGCATGGAGAACATAGGC
CCAGTTGAACTCGTCTATTCCGTTGTTGATAGTGTGCTTGATGCAGTGCA
AGGTGTCGCTCATCTGCAAAGGGTTTCCGAATTTGTTGACAGCGTTAGTT
GGCAAGAGCCTTTTATACGCGGCATAATAGGTGTACAATTTCTGCTTTTC
ATGGTCACTTATGCAACGAGAAGAAATGACATATTTCAGTTTTCTATTCT
GTTCTTCCTTACTGCTACCTCGCTTTTGGCAGAGCGCCTAAACGAGTACG
GCAGAAAACATTGGAAAAACTTCGCCTCCCAAAATTACTTTGACAGAAAC
GGATTCTTTATGCTCGCGTTTGTGTCCGGGCCATTCATTATACTTGCAAA
CTTCATAGTGATTGGCATGTTTCTCCGCCTCGTTAAATTATATGCCCGTC
GGAAACGTCGTGAGGCCCTCATGCGAAGACAGTCTACTTCAAATCGACAA
AGGCGGGCCGCATCTCCCAGTGAAGCTTCTGCTGTAGCAGACAGGAAGAA
GAGCAAATAA
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protein sequence of Gvermi6959.t1

>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
LVLTTTDLLSVTYTEHANKNLLQIAFALFAALSATPVIAEVPSCKKFGVV
GKVHVSLLFAYQCKLGFNLKESISGSSSRSPVRIGFFPDRYLWISMENIG
PVELVYSVVDSVLDAVQGVAHLQRVSEFVDSVSWQEPFIRGIIGVQFLLF
MVTYATRRNDIFQFSILFFLTATSLLAERLNEYGRKHWKNFASQNYFDRN
GFFMLAFVSGPFIILANFIVIGMFLRLVKLYARRKRREALMRRQSTSNRQ
RRAASPSEASAVADRKKSK*
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mRNA from alignment at ScGOVlb_24229:750360..751260+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=901bp|location=Sequence derived from alignment at ScGOVlb_24229:750360..751260+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGTCCTCACGACCACAGATCTCCTCTCCGTGACTTACACTGAGCATGC
GAACAAGAACCTGTTGCAGATTGCGTTTGCATTATTCGCTGCCCTCTCCG
CGACCCCTGTGATAGCCGAGGTGCCTTCTTGCAAAAAATTTGGCGTTGTG
GGGAAGGTTCATGTATCGTTACTGTTCGCATATCAGTGCAAGCTGGGCTT
CAACCTCAAAGAAAGCATTAGTGGTTCGTCATCAAGAAGCCCGGTCAGAA
TAGGCTTTTTCCCCGATCGTTATCTCTGGATCAGCATGGAGAACATAGGC
CCAGTTGAACTCGTCTATTCCGTTGTTGATAGTGTGCTTGATGCAGTGCA
AGGTGTCGCTCATCTGCAAAGGGTTTCCGAATTTGTTGACAGCGTTAGTT
GGCAAGAGCCTTTTATACGCGGCATAATAGGTGTACAATTTCTGCTTTTC
ATGGTCACTTATGCAACGAGAAGAAATGACATATTTCAGTTTTCTATTCT
GTTCTTCCTTACTGCTACCTCGCTTTTGGCAGAGCGCCTAAACGAGTACG
GCAGAAAACATTGGAAAAACTTCGCCTCCCAAAATTACTTTGACAGAAAC
GGATTCTTTATGCTCGCGTTTGTGTCCGGGCCATTCATTATACTTGCAAA
CTTCATAGTGGTAAGCAGCAGCAGCTCGAATATTCCAAATTGCTTGCGAG
CCCATCCACCTTTGACGACGTCACTAACTTCTTTCAATGCTTCGTGAGTA
GATTGGCATGTTTCTCCGCCTCGTTAAATTATATGCCCGTCGGAAACGTC
GTGAGGCCCTCATGCGAAGACAGTCTACTTCAAATCGACAAAGGCGGGCC
GCATCTCCCAGTGAAGCTTCTGCTGTAGCAGACAGGAAGAAGAGCAAATA
A
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Coding sequence (CDS) from alignment at ScGOVlb_24229:750360..751260+

>Gvermi6959.t1 ID=Gvermi6959.t1|Name=Gvermi6959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=810bp|location=Sequence derived from alignment at ScGOVlb_24229:750360..751260+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGTCCTCACGACCACAGATCTCCTCTCCGTGACTTACACTGAGCATGC
GAACAAGAACCTGTTGCAGATTGCGTTTGCATTATTCGCTGCCCTCTCCG
CGACCCCTGTGATAGCCGAGGTGCCTTCTTGCAAAAAATTTGGCGTTGTG
GGGAAGGTTCATGTATCGTTACTGTTCGCATATCAGTGCAAGCTGGGCTT
CAACCTCAAAGAAAGCATTAGTGGTTCGTCATCAAGAAGCCCGGTCAGAA
TAGGCTTTTTCCCCGATCGTTATCTCTGGATCAGCATGGAGAACATAGGC
CCAGTTGAACTCGTCTATTCCGTTGTTGATAGTGTGCTTGATGCAGTGCA
AGGTGTCGCTCATCTGCAAAGGGTTTCCGAATTTGTTGACAGCGTTAGTT
GGCAAGAGCCTTTTATACGCGGCATAATAGGTGTACAATTTCTGCTTTTC
ATGGTCACTTATGCAACGAGAAGAAATGACATATTTCAGTTTTCTATTCT
GTTCTTCCTTACTGCTACCTCGCTTTTGGCAGAGCGCCTAAACGAGTACG
GCAGAAAACATTGGAAAAACTTCGCCTCCCAAAATTACTTTGACAGAAAC
GGATTCTTTATGCTCGCGTTTGTGTCCGGGCCATTCATTATACTTGCAAA
CTTCATAGTGATTGGCATGTTTCTCCGCCTCGTTAAATTATATGCCCGTC
GGAAACGTCGTGAGGCCCTCATGCGAAGACAGTCTACTTCAAATCGACAA
AGGCGGGCCGCATCTCCCAGTGAAGCTTCTGCTGTAGCAGACAGGAAGAA
GAGCAAATAA
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