Gvermi6949.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6949.t1
Unique NameGvermi6949.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length255
Homology
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A2V3INQ6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INQ6_9FLOR)

HSP 1 Score: 348 bits (893), Expect = 1.030e-118
Identity = 176/246 (71.54%), Postives = 201/246 (81.71%), Query Frame = 0
Query:    7 AGIFKRRRRSETARTRKRQRTPAQDLEGENGNDARVKLSQPKRREPRKRGDAGWHREQFSANIEKVVLNDAATAERIDLGGDVGSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQLKH 252
            AG+FK+R RS   +TRKR R P  D E     D+RVKL Q K +  +KR ++ W RE FS   E     +A TAER D+GGD    K+ KK FGPM+APAHLR SVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEK+KRDA+LRGE+P++E+A++ KEEYDE GLPFACFLCREEFK+P+ TLC+HYFCE+CAL+RMEKD TCPICKKQLR TLNPAPKLIAKLQLKH
Sbjct:   18 AGVFKKRARSGATKTRKRTR-PVDDGE----TDSRVKLPQQKTKVAKKR-NSSWQRELFSTGAESAPTQNA-TAERGDVGGDEAPPKTKKKAFGPMRAPAHLRASVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKRKRDALLRGENPNNEDANEKKEEYDEDGLPFACFLCREEFKSPIKTLCDHYFCEKCALARMEKDSTCPICKKQLRDTLNPAPKLIAKLQLKH 256          
BLAST of Gvermi6949.t1 vs. uniprot
Match: R7QEF1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEF1_CHOCR)

HSP 1 Score: 276 bits (705), Expect = 3.560e-90
Identity = 141/255 (55.29%), Postives = 182/255 (71.37%), Query Frame = 0
Query:    3 EKPEAGIFKRRRRSETARTRKRQRTPAQDLEGENGND--ARVKLSQPKRREPRKRGDAGWHREQFSANIEKVVLNDAATAERIDLGGDVGSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDE-EASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQLKHRR 254
            EK  A I K+R R+ + R  +       D  G+ G +  A+ ++ + KR+E        W R  FSAN +    +  ATA R D+GG+       KKPFGPM+APAH+RTSVRVDYQ D+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEK +R+ ++RGE+PD+E + ++ +++ DE GLPFAC++CR +FK PV+T+C HYFCE+CAL R+ KD TC IC+KQL  TLN A KL+AKL+ K R+
Sbjct:    7 EKRSAVILKKRSRTSSRRRVRVSTEENDDATGKQGLELVAKDRIGKRKRKE--------WERPHFSANGKLSEPSAIATAVREDIGGEANPHNKRKKPFGPMQAPAHIRTSVRVDYQADICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKLRREKVIRGENPDEESQGNESQKDLDEDGLPFACYICRGDFKNPVVTICHHYFCEQCALDRLSKDSTCAICRKQLSGTLNVATKLVAKLKTKLRK 253          
BLAST of Gvermi6949.t1 vs. uniprot
Match: W8C1K0_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8C1K0_CERCA)

HSP 1 Score: 193 bits (490), Expect = 1.020e-56
Identity = 93/163 (57.06%), Postives = 113/163 (69.33%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQLKH 252
            G++ S     GPM+APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D A        A  RGE   DE+ +K +   DE  LPF CF+CR  F+ PV+T C+HYFCE+CAL   +K   C +C +Q     NPA +LIA+L+ +H
Sbjct:  165 GNASSGMVRKGPMRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLELDHA--------AQQRGEIESDEDDAKYEIHSDEETLPFKCFICRNSFENPVVTKCKHYFCEKCALENYKKSQRCFVCSQQTNGIFNPAKELIARLKNEH 319          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A0A1WMR6_ZEUCU (RING finger protein 113A n=3 Tax=Dacini TaxID=43871 RepID=A0A0A1WMR6_ZEUCU)

HSP 1 Score: 191 bits (485), Expect = 5.250e-56
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            G++ S     GP++APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D A        A  RG+   DE+ +K +   DE  LPF CF+CR  F+ PV+T C+HYFCE+CAL   +K   C IC +Q     NPA +LIA+L+
Sbjct:  162 GNASSGMVRKGPIRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLELDHA--------AQQRGDAESDEDDAKYEIHSDEESLPFKCFICRNSFENPVVTKCKHYFCEKCALENYKKSQRCKICSQQTNGIFNPAKELIARLK 313          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A1I8MP48_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MP48_MUSDO)

HSP 1 Score: 190 bits (483), Expect = 1.450e-55
Identity = 92/160 (57.50%), Postives = 111/160 (69.38%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            G++ S     GP++APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D A        A  +GE   DE+ SK +   DE  LPF CF+CR+ F  PV+T C+HYFCE+CAL   +K   C IC +Q     NPA +LIA+L+
Sbjct:  169 GNASSGMVRKGPIRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLELDHA--------AQQKGECESDEDDSKYEIHSDEESLPFKCFICRQSFVNPVVTKCKHYFCEKCALEHYKKSQRCFICSQQTNGIFNPAKELIARLK 320          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A0L0C3L2_LUCCU (Uncharacterized protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0C3L2_LUCCU)

HSP 1 Score: 189 bits (480), Expect = 3.470e-55
Identity = 96/181 (53.04%), Postives = 120/181 (66.30%), Query Frame = 0
Query:   69 IEKVVLNDAATAERIDLGGDVGSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            I + + N A   ++ D      SS   +K  GP++APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D+A  +K        G+   DE+ SK +   DE  LPF CF+CR+ F  PV+T C+HYFCE+CAL   +K   C IC +Q     NPA +LIA+L+
Sbjct:  149 IYRGINNYAQYYKKQDTAAGNASSGMVRK--GPIRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDYASHKK--------GDCESDEDDSKYEIHSDEETLPFKCFICRQSFVNPVVTKCKHYFCEKCALENYKKSQRCFICSQQTNGIFNPAKELIARLK 319          
BLAST of Gvermi6949.t1 vs. uniprot
Match: UPI000811A6F2 (RING finger protein 113A n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811A6F2)

HSP 1 Score: 188 bits (478), Expect = 6.040e-55
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            G++ S     GP++APAHLR +VR DYQPD+CKDYKETG+CGFGDSCKFLHDRSDYKAGWQLE D A        A  RGE   DE+ +K +   DE  LPF CF+CR  F+ PV+T C+HYFCE+CAL   +K   C +C +Q     NPA +LIA+L+
Sbjct:  163 GNASSGMVRKGPIRAPAHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKAGWQLELDHA--------AQQRGEAESDEDDTKYEIHSDEETLPFRCFICRNSFENPVVTKCKHYFCEKCALENYKKSQRCYLCSQQTNGIFNPAKELIARLK 314          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A034WUB5_BACDO (E3 ubiquitin-protein ligase RNF113A n=3 Tax=Bactrocera TaxID=27456 RepID=A0A034WUB5_BACDO)

HSP 1 Score: 188 bits (477), Expect = 8.290e-55
Identity = 91/160 (56.88%), Postives = 109/160 (68.12%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            G++ S     GP++APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D A        A  RGE   DE+ +K +   DE  LPF CF+CR  F  PV+T C+HYFCE+CAL   +K   C IC +Q     NPA +LIA+ +
Sbjct:  162 GNASSGMVRKGPIRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLELDHA--------AQQRGEAESDEDDAKYEIHSDEETLPFKCFICRNSFVNPVVTKCKHYFCEKCALENYKKSQRCIICSQQTNGIFNPAKELIARFK 313          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A1A9WJ24_9MUSC (Uncharacterized protein n=1 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9WJ24_9MUSC)

HSP 1 Score: 188 bits (477), Expect = 8.750e-55
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0
Query:   90 GSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQ 249
            G++ S     GP++APAHLR +VR DYQPD+CKDYKETGYCGFGDSCKFLHDRSDYKAGWQLE D+         A  +GE   D + SK +   DE  LPF CF+CR+ F  PV+T C+HYFCE+CAL + +K   C IC +Q     NPA +LIA+L+
Sbjct:  158 GNASSGMVRKGPIRAPAHLRATVRWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLELDYT--------AQQKGECESDGDDSKYEIHSDEESLPFKCFICRQSFVNPVITKCKHYFCEKCALEQYKKSQRCFICSQQTNGIFNPAKELIARLK 309          
BLAST of Gvermi6949.t1 vs. uniprot
Match: A0A7S2ZZL0_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZL0_9RHOD)

HSP 1 Score: 186 bits (471), Expect = 9.620e-55
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 0
Query:   75 NDAATAERIDLGGDVGSSKSSKKPFGPMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQLERDWAEKEKKKRDAMLRG---EDPDDEEASKPKEEYDEHGLPFACFLCREEFKTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIA 246
            +  ATA  +    +  S+ + K+ +GP KAP++LR SVR DYQPD+CKDYKETG+CGFGD+C FLHDR DYK+GWQLE++W E   KK+  +  G   +D D E+  K   +  +  LPFACF+CR+ F  P++TLC+HYF E+CAL R   DPTC +C K  +   N A KL+A
Sbjct:   80 DQGATAVDLSTLDEKPSTGTVKRSYGPKKAPSNLRASVRFDYQPDICKDYKETGFCGFGDACIFLHDRGDYKSGWQLEKEWDEANAKKKLKLKSGKTDQDDDIEDQQKADVKKGKQELPFACFICRKPFIRPIVTLCQHYFDEKCALDRFSTDPTCAVCGKDTKGAFNVAKKLVA 254          
The following BLAST results are available for this feature:
BLAST of Gvermi6949.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INQ6_9FLOR1.030e-11871.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QEF1_CHOCR3.560e-9055.29Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
W8C1K0_CERCA1.020e-5657.06(Mediterranean fruit fly) hypothetical protein n=1... [more]
A0A0A1WMR6_ZEUCU5.250e-5656.88RING finger protein 113A n=3 Tax=Dacini TaxID=4387... [more]
A0A1I8MP48_MUSDO1.450e-5557.50Uncharacterized protein n=1 Tax=Musca domestica Ta... [more]
A0A0L0C3L2_LUCCU3.470e-5553.04Uncharacterized protein n=3 Tax=Lucilia TaxID=7374... [more]
UPI000811A6F26.040e-5556.25RING finger protein 113A n=1 Tax=Rhagoletis zephyr... [more]
A0A034WUB5_BACDO8.290e-5556.88E3 ubiquitin-protein ligase RNF113A n=3 Tax=Bactro... [more]
A0A1A9WJ24_9MUSC8.750e-5556.25Uncharacterized protein n=1 Tax=Glossina brevipalp... [more]
A0A7S2ZZL0_9RHOD9.620e-5550.29Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 115..142
e-value: 1.6E-7
score: 41.0
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 116..141
e-value: 1.8E-9
score: 37.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 115..143
score: 15.23438
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 193..230
e-value: 1.3E-5
score: 34.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 193..231
score: 11.707369
NoneNo IPR availableGENE3D4.10.1000.10coord: 114..147
e-value: 1.6E-5
score: 26.2
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 193..230
e-value: 6.7E-9
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availablePANTHERPTHR12930:SF0RING FINGER PROTEIN 113A1-RELATEDcoord: 90..251
NoneNo IPR availableCDDcd16539RING-HC_RNF113A_Bcoord: 191..230
e-value: 5.96973E-17
score: 70.3371
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 192..238
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 191..250
e-value: 2.0E-15
score: 58.1
IPR039971Pre-mRNA-splicing factor CWC24-likePANTHERPTHR12930ZINC FINGER PROTEIN 183coord: 90..251
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 208..217
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 114..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:722860..723624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1Gvermi6949.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 722860..723624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MTEKPEAGIFKRRRRSETARTRKRQRTPAQDLEGENGNDARVKLSQPKRR
EPRKRGDAGWHREQFSANIEKVVLNDAATAERIDLGGDVGSSKSSKKPFG
PMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQ
LERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEF
KTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQL
KHRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR039971CWC24-like
IPR017907Znf_RING_CS
IPR036855Znf_CCCH_sf