Gvermi6949.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6949.t1
Unique NameGvermi6949.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:722860..723624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7213.XP_004537287.1
Preferred nameRNF113A
PFAMszf-C3HC4_3,zf-CCCH
Max annot lvl33208|Metazoa
KEGG koko:K13127,ko:K15696
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
Evalue2.78e-56
EggNOG OGsCOG5152@1|root,KOG1813@2759|Eukaryota,38BQR@33154|Opisthokonta,3BHF3@33208|Metazoa,3CSXG@33213|Bilateria,41XPT@6656|Arthropoda,3SKMX@50557|Insecta,44X5K@7147|Diptera
DescriptionZinc ion binding
COG categoryO
BRITEko00000,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6949Gvermi6949Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 722860..723624 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1.stop1Gvermi6949.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 722860..722862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1.CDS1Gvermi6949.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 722860..723624 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1.exon1Gvermi6949.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 722860..723624 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1.start1Gvermi6949.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 723622..723624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6949.t1Gvermi6949.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 722860..723624 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=255bp
MTEKPEAGIFKRRRRSETARTRKRQRTPAQDLEGENGNDARVKLSQPKRR
EPRKRGDAGWHREQFSANIEKVVLNDAATAERIDLGGDVGSSKSSKKPFG
PMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQ
LERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEF
KTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQL
KHRR*
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spliced messenger RNA

>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_24229:722860..723624- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAGAAGCCTGAAGCCGGAATTTTCAAAAGGCGGAGGCGATCGGA
GACTGCAAGAACGAGAAAAAGACAAAGAACGCCCGCGCAAGACCTAGAGG
GAGAAAATGGAAACGATGCTAGGGTGAAGCTCTCACAGCCCAAGCGACGA
GAACCGCGAAAGAGGGGCGACGCAGGCTGGCACAGAGAACAGTTTTCAGC
AAATATTGAAAAAGTTGTTCTAAATGACGCCGCTACCGCCGAGAGAATTG
ATCTCGGAGGGGATGTTGGATCTTCCAAGTCTTCTAAGAAGCCGTTTGGT
CCCATGAAGGCACCTGCTCATTTGCGAACGTCTGTGCGTGTGGACTATCA
GCCTGATGTGTGCAAGGACTACAAAGAGACGGGGTATTGTGGATTTGGGG
ACTCTTGCAAGTTTTTGCACGACAGGAGTGACTACAAGGCTGGGTGGCAA
TTGGAGAGAGATTGGGCTGAAAAAGAAAAAAAGAAGCGAGACGCTATGTT
ACGAGGTGAAGATCCAGATGACGAAGAAGCTAGCAAGCCGAAGGAAGAAT
ATGATGAACACGGGCTTCCTTTTGCATGCTTTCTGTGTCGAGAGGAGTTC
AAGACGCCTGTTATGACTCTTTGCGAACACTATTTCTGCGAGGAGTGCGC
CCTTTCGCGAATGGAGAAAGATCCCACTTGCCCAATTTGCAAAAAGCAAC
TGCGACACACGTTAAATCCTGCTCCAAAGTTGATAGCGAAGCTTCAATTA
AAGCATCGTCGGTAG
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protein sequence of Gvermi6949.t1

>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MTEKPEAGIFKRRRRSETARTRKRQRTPAQDLEGENGNDARVKLSQPKRR
EPRKRGDAGWHREQFSANIEKVVLNDAATAERIDLGGDVGSSKSSKKPFG
PMKAPAHLRTSVRVDYQPDVCKDYKETGYCGFGDSCKFLHDRSDYKAGWQ
LERDWAEKEKKKRDAMLRGEDPDDEEASKPKEEYDEHGLPFACFLCREEF
KTPVMTLCEHYFCEECALSRMEKDPTCPICKKQLRHTLNPAPKLIAKLQL
KHRR*
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mRNA from alignment at ScGOVlb_24229:722860..723624-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_24229:722860..723624- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGAGAAGCCTGAAGCCGGAATTTTCAAAAGGCGGAGGCGATCGGA
GACTGCAAGAACGAGAAAAAGACAAAGAACGCCCGCGCAAGACCTAGAGG
GAGAAAATGGAAACGATGCTAGGGTGAAGCTCTCACAGCCCAAGCGACGA
GAACCGCGAAAGAGGGGCGACGCAGGCTGGCACAGAGAACAGTTTTCAGC
AAATATTGAAAAAGTTGTTCTAAATGACGCCGCTACCGCCGAGAGAATTG
ATCTCGGAGGGGATGTTGGATCTTCCAAGTCTTCTAAGAAGCCGTTTGGT
CCCATGAAGGCACCTGCTCATTTGCGAACGTCTGTGCGTGTGGACTATCA
GCCTGATGTGTGCAAGGACTACAAAGAGACGGGGTATTGTGGATTTGGGG
ACTCTTGCAAGTTTTTGCACGACAGGAGTGACTACAAGGCTGGGTGGCAA
TTGGAGAGAGATTGGGCTGAAAAAGAAAAAAAGAAGCGAGACGCTATGTT
ACGAGGTGAAGATCCAGATGACGAAGAAGCTAGCAAGCCGAAGGAAGAAT
ATGATGAACACGGGCTTCCTTTTGCATGCTTTCTGTGTCGAGAGGAGTTC
AAGACGCCTGTTATGACTCTTTGCGAACACTATTTCTGCGAGGAGTGCGC
CCTTTCGCGAATGGAGAAAGATCCCACTTGCCCAATTTGCAAAAAGCAAC
TGCGACACACGTTAAATCCTGCTCCAAAGTTGATAGCGAAGCTTCAATTA
AAGCATCGTCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:722860..723624-

>Gvermi6949.t1 ID=Gvermi6949.t1|Name=Gvermi6949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=765bp|location=Sequence derived from alignment at ScGOVlb_24229:722860..723624- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGAGAAGCCTGAAGCCGGAATTTTCAAAAGGCGGAGGCGATCGGA
GACTGCAAGAACGAGAAAAAGACAAAGAACGCCCGCGCAAGACCTAGAGG
GAGAAAATGGAAACGATGCTAGGGTGAAGCTCTCACAGCCCAAGCGACGA
GAACCGCGAAAGAGGGGCGACGCAGGCTGGCACAGAGAACAGTTTTCAGC
AAATATTGAAAAAGTTGTTCTAAATGACGCCGCTACCGCCGAGAGAATTG
ATCTCGGAGGGGATGTTGGATCTTCCAAGTCTTCTAAGAAGCCGTTTGGT
CCCATGAAGGCACCTGCTCATTTGCGAACGTCTGTGCGTGTGGACTATCA
GCCTGATGTGTGCAAGGACTACAAAGAGACGGGGTATTGTGGATTTGGGG
ACTCTTGCAAGTTTTTGCACGACAGGAGTGACTACAAGGCTGGGTGGCAA
TTGGAGAGAGATTGGGCTGAAAAAGAAAAAAAGAAGCGAGACGCTATGTT
ACGAGGTGAAGATCCAGATGACGAAGAAGCTAGCAAGCCGAAGGAAGAAT
ATGATGAACACGGGCTTCCTTTTGCATGCTTTCTGTGTCGAGAGGAGTTC
AAGACGCCTGTTATGACTCTTTGCGAACACTATTTCTGCGAGGAGTGCGC
CCTTTCGCGAATGGAGAAAGATCCCACTTGCCCAATTTGCAAAAAGCAAC
TGCGACACACGTTAAATCCTGCTCCAAAGTTGATAGCGAAGCTTCAATTA
AAGCATCGTCGGTAG
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