Gvermi6943.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6943.t1
Unique NameGvermi6943.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length373
Homology
BLAST of Gvermi6943.t1 vs. uniprot
Match: A0A2V3INL8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL8_9FLOR)

HSP 1 Score: 563 bits (1452), Expect = 5.210e-200
Identity = 275/367 (74.93%), Postives = 309/367 (84.20%), Query Frame = 0
Query:    4 VRRAAFAFFVLWLLVATNPSASSTTSFPAFVRNVAPSSALPHRKCLHGSFPLCIESRRAYPELSLALEMWFAPHRLDPDLLRDREFEIIDYAIFTVARSKPFPTAENPGVAFVGILTLWLPVPHPARFTGSVELPNVIRFLRSHVRHMRRRALAYQRGRSFEAFRQRSLPDRPWEWLIAFFSITGVLWYMIPSRAKNHFTLTWQNLRERGHWWCMIFFHLSHGGSLLRLFRTIVSVNYLAPLLVSNRIVTLSGLYGIVLTSSATSTALAMLVLTRRSLFAAQHITSSTPLEINGGGACVYALLVAACLSPSCNKPLPGGARPFELLMLNILFDSFFLAGKKRIADYIAHTGASLGAWLFCSINLSTA 370
            + R A A FVLW+LVATNPSASS TSF  F+  V  S+  P R+C  G +PLC+ESRRAYP LSL LE  FAPHR+D   LR+  FE  DY IFTV RS P PT++NPGVAF+GILT+WLPVPHPAR TGSVELP++IR LRS VR +RR A A Q GRSFEAFR+ SLPDRPWEWLIA FSI G LW+MIP+RA+NHFTLTWQN+R+ GHWWCM+FFHLSHGGSLLRLFRTIVSVNYLAPLLVS+  ++LSGLYG++LTSSATSTALAMLVL RR +F      SSTPLEINGGGACVYALLV ACLSPSCN+PLPGGARPFELLMLN+LFDSFFLAG+KRIADY AHTGA+LGAWLFCSIN+S A
Sbjct:    4 ILRVALALFVLWVLVATNPSASSNTSFSTFITAVTSSTTRPLRQCHPGDYPLCVESRRAYPGLSLILEALFAPHRVDDARLRNLHFESTDYTIFTVVRSIPMPTSDNPGVAFIGILTMWLPVPHPARLTGSVELPHLIRVLRSRVRSVRRAAFANQAGRSFEAFRETSLPDRPWEWLIACFSIVGALWFMIPARARNHFTLTWQNVRQNGHWWCMVFFHLSHGGSLLRLFRTIVSVNYLAPLLVSDGRISLSGLYGVLLTSSATSTALAMLVLARRYVFGTLQSRSSTPLEINGGGACVYALLVVACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAGQKRIADYTAHTGAALGAWLFCSINMSVA 370          
BLAST of Gvermi6943.t1 vs. uniprot
Match: R7QGB7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGB7_CHOCR)

HSP 1 Score: 429 bits (1103), Expect = 5.960e-147
Identity = 220/379 (58.05%), Postives = 273/379 (72.03%), Query Frame = 0
Query:    1 MAFVRRAAFAFFVLWLLVATNPSASSTTSFPAFVRNVAPSSALPHRKCLHG-------SFPLCIESRRAYPELSLALEMWFAPHRLDPDLLRD---REFEIIDYAIFTVARSKPFPTAENPGVAFVGILTLWLPVPHPARFTGSVELPNVIRFLRSHVRHMRRRALAYQRGRSFEAFRQRSLPDRPWEWLIAFFSITGVLWYMIPSRAKNHFTLTWQNLRERGHWWCMIFFHLSHGGSLLRLFRTIVSVNYLAPLLVSNRIVTLSGLYGIVLTSSATSTALAMLVLTRRSLFAAQHITSSTPLEINGGGACVYALLVAACLSPSCNKPLPGGARPFELLMLNILFDSFFLAGKKRIADYIAHTGASLGAWLFCSINLST 369
            M  +RR    F VLW+LVATNP  SS   F  F+  +       HR  LH        S  +C+ +R+A+P LS ALE  FAPHR  P  L D     FE++D A+FT+AR++     + P   F+GIL  WLP+PH AR  GSVE  N +R+LR  V  ++R A   Q  RSFEAFR+RSLPDRPWEWLI +F+I G +W+M P  A  HFTLTWQN+R +G+WWCMI FHLSHGGSLLRL RT+ S+++LAP+L+S RI+ LSG+YG++LTSSATSTAL MLVL RR +F  +   + +P+EINGGGACVYALLVAACL+P  N+  PGGARPFELLMLN+LFDSFFLAGK++IADYIAHTGA+LG+WLFCSIN S+
Sbjct:    1 MGSIRRLLCTFAVLWILVATNPGPSS---FRHFLTKL-------HRTHLHTPTCQKAHSRDICLHARQAFPHLSAALESIFAPHRQVPSWLPDGPPHHFEVVDCAVFTLARTRLADLPDRPRHNFIGILGAWLPLPHTARLLGSVESRNFVRYLRRRVALVKRAAFD-QDLRSFEAFRERSLPDRPWEWLIVYFAIVGAIWFMFPQHATQHFTLTWQNVRLKGNWWCMILFHLSHGGSLLRLCRTVASISFLAPILISRRIINLSGMYGVLLTSSATSTALGMLVLARRYVFMTRESGTRSPIEINGGGACVYALLVAACLAPDSNRSFPGGARPFELLMLNVLFDSFFLAGKRKIADYIAHTGAALGSWLFCSINQSS 368          
The following BLAST results are available for this feature:
BLAST of Gvermi6943.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INL8_9FLOR5.210e-20074.93Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QGB7_CHOCR5.960e-14758.05Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 277..372
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..237
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 195..214
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..176
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 238..256
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..194
NoneNo IPR availableTMHMMTMhelixcoord: 177..194
NoneNo IPR availableTMHMMTMhelixcoord: 254..276
NoneNo IPR availableTMHMMTMhelixcoord: 214..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:708914..710032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1Gvermi6943.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 708914..710032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=373bp
MAFVRRAAFAFFVLWLLVATNPSASSTTSFPAFVRNVAPSSALPHRKCLH
GSFPLCIESRRAYPELSLALEMWFAPHRLDPDLLRDREFEIIDYAIFTVA
RSKPFPTAENPGVAFVGILTLWLPVPHPARFTGSVELPNVIRFLRSHVRH
MRRRALAYQRGRSFEAFRQRSLPDRPWEWLIAFFSITGVLWYMIPSRAKN
HFTLTWQNLRERGHWWCMIFFHLSHGGSLLRLFRTIVSVNYLAPLLVSNR
IVTLSGLYGIVLTSSATSTALAMLVLTRRSLFAAQHITSSTPLEINGGGA
CVYALLVAACLSPSCNKPLPGGARPFELLMLNILFDSFFLAGKKRIADYI
AHTGASLGAWLFCSINLSTAAT*
back to top