Gvermi6943.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6943.t1
Unique NameGvermi6943.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:708914..710032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6943Gvermi6943Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 708914..710032 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1.start1Gvermi6943.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 708914..708916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1.CDS1Gvermi6943.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 708914..710032 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1.exon1Gvermi6943.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 708914..710032 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1.stop1Gvermi6943.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 710030..710032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6943.t1Gvermi6943.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 708914..710032 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=373bp
MAFVRRAAFAFFVLWLLVATNPSASSTTSFPAFVRNVAPSSALPHRKCLH
GSFPLCIESRRAYPELSLALEMWFAPHRLDPDLLRDREFEIIDYAIFTVA
RSKPFPTAENPGVAFVGILTLWLPVPHPARFTGSVELPNVIRFLRSHVRH
MRRRALAYQRGRSFEAFRQRSLPDRPWEWLIAFFSITGVLWYMIPSRAKN
HFTLTWQNLRERGHWWCMIFFHLSHGGSLLRLFRTIVSVNYLAPLLVSNR
IVTLSGLYGIVLTSSATSTALAMLVLTRRSLFAAQHITSSTPLEINGGGA
CVYALLVAACLSPSCNKPLPGGARPFELLMLNILFDSFFLAGKKRIADYI
AHTGASLGAWLFCSINLSTAAT*
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spliced messenger RNA

>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_24229:708914..710032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTGCGTCGCGCGGCGTTCGCGTTCTTCGTGCTGTGGCTGCT
GGTCGCCACCAACCCATCTGCGTCGTCCACAACCAGCTTCCCGGCCTTCG
TTCGCAACGTCGCGCCGTCGTCCGCCCTGCCTCATCGCAAATGTTTGCAC
GGCTCGTTTCCGCTCTGCATCGAGTCCAGGCGCGCGTACCCGGAGCTGTC
GCTGGCGCTGGAGATGTGGTTTGCCCCCCACCGCTTGGACCCCGATCTCC
TACGAGATCGTGAATTTGAGATCATTGACTACGCGATCTTCACCGTTGCC
CGATCCAAGCCCTTTCCCACTGCCGAAAACCCCGGCGTCGCCTTCGTCGG
CATTCTCACCCTGTGGCTACCGGTTCCGCACCCCGCGCGCTTTACGGGTT
CTGTAGAACTCCCCAATGTCATCCGATTTCTGCGATCTCACGTGCGTCAT
ATGCGTCGCCGTGCGCTGGCCTACCAGCGCGGTCGCTCCTTTGAGGCATT
TCGACAGCGTTCCTTGCCGGATCGCCCGTGGGAGTGGCTCATCGCCTTCT
TTTCTATCACAGGCGTTTTGTGGTACATGATCCCCAGTCGAGCAAAAAAC
CATTTCACTCTTACCTGGCAGAACCTCAGAGAGAGGGGTCATTGGTGGTG
CATGATATTCTTCCATTTGTCCCATGGCGGTTCCCTTCTTCGACTATTTA
GAACCATCGTGTCAGTCAACTATCTTGCCCCGCTTCTCGTTTCGAATCGA
ATCGTTACATTGTCGGGTTTGTACGGCATCGTGCTTACCTCTTCTGCGAC
TTCTACTGCCTTGGCTATGCTGGTTTTGACTCGTCGTTCTCTTTTTGCCG
CACAACACATCACATCTAGCACACCATTGGAGATCAATGGAGGCGGCGCA
TGCGTGTATGCCCTCCTGGTAGCAGCATGTCTCTCGCCTTCTTGCAACAA
ACCGCTTCCGGGAGGCGCGCGCCCTTTCGAACTGCTCATGCTTAATATCT
TGTTTGATTCCTTCTTCCTCGCAGGCAAAAAGCGTATTGCCGACTACATT
GCTCATACTGGAGCTTCTCTAGGAGCATGGCTATTTTGCTCGATCAATTT
GTCAACTGCTGCTACATAA
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protein sequence of Gvermi6943.t1

>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=373bp
MAFVRRAAFAFFVLWLLVATNPSASSTTSFPAFVRNVAPSSALPHRKCLH
GSFPLCIESRRAYPELSLALEMWFAPHRLDPDLLRDREFEIIDYAIFTVA
RSKPFPTAENPGVAFVGILTLWLPVPHPARFTGSVELPNVIRFLRSHVRH
MRRRALAYQRGRSFEAFRQRSLPDRPWEWLIAFFSITGVLWYMIPSRAKN
HFTLTWQNLRERGHWWCMIFFHLSHGGSLLRLFRTIVSVNYLAPLLVSNR
IVTLSGLYGIVLTSSATSTALAMLVLTRRSLFAAQHITSSTPLEINGGGA
CVYALLVAACLSPSCNKPLPGGARPFELLMLNILFDSFFLAGKKRIADYI
AHTGASLGAWLFCSINLSTAAT*
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mRNA from alignment at ScGOVlb_24229:708914..710032+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_24229:708914..710032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTGCGTCGCGCGGCGTTCGCGTTCTTCGTGCTGTGGCTGCT
GGTCGCCACCAACCCATCTGCGTCGTCCACAACCAGCTTCCCGGCCTTCG
TTCGCAACGTCGCGCCGTCGTCCGCCCTGCCTCATCGCAAATGTTTGCAC
GGCTCGTTTCCGCTCTGCATCGAGTCCAGGCGCGCGTACCCGGAGCTGTC
GCTGGCGCTGGAGATGTGGTTTGCCCCCCACCGCTTGGACCCCGATCTCC
TACGAGATCGTGAATTTGAGATCATTGACTACGCGATCTTCACCGTTGCC
CGATCCAAGCCCTTTCCCACTGCCGAAAACCCCGGCGTCGCCTTCGTCGG
CATTCTCACCCTGTGGCTACCGGTTCCGCACCCCGCGCGCTTTACGGGTT
CTGTAGAACTCCCCAATGTCATCCGATTTCTGCGATCTCACGTGCGTCAT
ATGCGTCGCCGTGCGCTGGCCTACCAGCGCGGTCGCTCCTTTGAGGCATT
TCGACAGCGTTCCTTGCCGGATCGCCCGTGGGAGTGGCTCATCGCCTTCT
TTTCTATCACAGGCGTTTTGTGGTACATGATCCCCAGTCGAGCAAAAAAC
CATTTCACTCTTACCTGGCAGAACCTCAGAGAGAGGGGTCATTGGTGGTG
CATGATATTCTTCCATTTGTCCCATGGCGGTTCCCTTCTTCGACTATTTA
GAACCATCGTGTCAGTCAACTATCTTGCCCCGCTTCTCGTTTCGAATCGA
ATCGTTACATTGTCGGGTTTGTACGGCATCGTGCTTACCTCTTCTGCGAC
TTCTACTGCCTTGGCTATGCTGGTTTTGACTCGTCGTTCTCTTTTTGCCG
CACAACACATCACATCTAGCACACCATTGGAGATCAATGGAGGCGGCGCA
TGCGTGTATGCCCTCCTGGTAGCAGCATGTCTCTCGCCTTCTTGCAACAA
ACCGCTTCCGGGAGGCGCGCGCCCTTTCGAACTGCTCATGCTTAATATCT
TGTTTGATTCCTTCTTCCTCGCAGGCAAAAAGCGTATTGCCGACTACATT
GCTCATACTGGAGCTTCTCTAGGAGCATGGCTATTTTGCTCGATCAATTT
GTCAACTGCTGCTACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:708914..710032+

>Gvermi6943.t1 ID=Gvermi6943.t1|Name=Gvermi6943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1119bp|location=Sequence derived from alignment at ScGOVlb_24229:708914..710032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTGCGTCGCGCGGCGTTCGCGTTCTTCGTGCTGTGGCTGCT
GGTCGCCACCAACCCATCTGCGTCGTCCACAACCAGCTTCCCGGCCTTCG
TTCGCAACGTCGCGCCGTCGTCCGCCCTGCCTCATCGCAAATGTTTGCAC
GGCTCGTTTCCGCTCTGCATCGAGTCCAGGCGCGCGTACCCGGAGCTGTC
GCTGGCGCTGGAGATGTGGTTTGCCCCCCACCGCTTGGACCCCGATCTCC
TACGAGATCGTGAATTTGAGATCATTGACTACGCGATCTTCACCGTTGCC
CGATCCAAGCCCTTTCCCACTGCCGAAAACCCCGGCGTCGCCTTCGTCGG
CATTCTCACCCTGTGGCTACCGGTTCCGCACCCCGCGCGCTTTACGGGTT
CTGTAGAACTCCCCAATGTCATCCGATTTCTGCGATCTCACGTGCGTCAT
ATGCGTCGCCGTGCGCTGGCCTACCAGCGCGGTCGCTCCTTTGAGGCATT
TCGACAGCGTTCCTTGCCGGATCGCCCGTGGGAGTGGCTCATCGCCTTCT
TTTCTATCACAGGCGTTTTGTGGTACATGATCCCCAGTCGAGCAAAAAAC
CATTTCACTCTTACCTGGCAGAACCTCAGAGAGAGGGGTCATTGGTGGTG
CATGATATTCTTCCATTTGTCCCATGGCGGTTCCCTTCTTCGACTATTTA
GAACCATCGTGTCAGTCAACTATCTTGCCCCGCTTCTCGTTTCGAATCGA
ATCGTTACATTGTCGGGTTTGTACGGCATCGTGCTTACCTCTTCTGCGAC
TTCTACTGCCTTGGCTATGCTGGTTTTGACTCGTCGTTCTCTTTTTGCCG
CACAACACATCACATCTAGCACACCATTGGAGATCAATGGAGGCGGCGCA
TGCGTGTATGCCCTCCTGGTAGCAGCATGTCTCTCGCCTTCTTGCAACAA
ACCGCTTCCGGGAGGCGCGCGCCCTTTCGAACTGCTCATGCTTAATATCT
TGTTTGATTCCTTCTTCCTCGCAGGCAAAAAGCGTATTGCCGACTACATT
GCTCATACTGGAGCTTCTCTAGGAGCATGGCTATTTTGCTCGATCAATTT
GTCAACTGCTGCTACATAA
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