Gvermi6925.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6925.t1
Unique NameGvermi6925.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Homology
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A2V3IWB5_9FLOR (SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWB5_9FLOR)

HSP 1 Score: 307 bits (786), Expect = 2.000e-105
Identity = 152/163 (93.25%), Postives = 159/163 (97.55%), Query Frame = 0
Query:    1 MAETPNQANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            MA+ PNQ N+ITLKL+SKDGEIFEVEK VAMQINFVKGMLEDVDE+DGMEIPMGEVEAAILAKVVEYC+FHYQQELNQT+ADEVDRWER+FVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQLEEVRRDNAWCAEDR
Sbjct:    1 MADVPNQINNITLKLKSKDGEIFEVEKPVAMQINFVKGMLEDVDEIDGMEIPMGEVEAAILAKVVEYCKFHYQQELNQTNADEVDRWERAFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIDNDFTPEQLEEVRRDNAWCAEDR 163          
BLAST of Gvermi6925.t1 vs. uniprot
Match: R7QD44_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD44_CHOCR)

HSP 1 Score: 277 bits (709), Expect = 1.130e-93
Identity = 137/159 (86.16%), Postives = 150/159 (94.34%), Query Frame = 0
Query:    5 PNQANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            P+Q ++I LKL+SKDGE FEVEKAVA QINFVKGMLEDVDEVDGMEIPMGEVEA+ILAKVVE+C+F +QQELNQTS DEVDRWE++FVQV+K TLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQL EVRRDNAWC++DR
Sbjct:    6 PSQQSNIMLKLKSKDGETFEVEKAVATQINFVKGMLEDVDEVDGMEIPMGEVEASILAKVVEFCKFRHQQELNQTSPDEVDRWEKAFVQVEKPTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIENDFTPEQLAEVRRDNAWCSDDR 164          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A7S0ZFH6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFH6_9RHOD)

HSP 1 Score: 181 bits (460), Expect = 1.570e-55
Identity = 90/149 (60.40%), Postives = 116/149 (77.85%), Query Frame = 0
Query:   13 LKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            +KL S D E FEVE+ VA   N V  +LEDV E D   IP+  VEA ILAKV+EYCR+H+Q + N  + ++V++W++ FV+VDK TLF LILAAN+LD+Q+LLDLTCKT+ADMIKGK+ EQIR+EF I NDFTPE+ EE++R+NAW  E
Sbjct:   33 VKLVSSDQETFEVERGVATISNLVSHVLEDVGE-DEKLIPIPNVEARILAKVIEYCRYHHQLQTNPQADEDVEKWDKEFVRVDKPTLFSLILAANYLDIQALLDLTCKTIADMIKGKSAEQIRSEFGIENDFTPEEEEEIKRENAWVEE 180          
BLAST of Gvermi6925.t1 vs. uniprot
Match: M2W233_GALSU (E3 ubiquitin ligase SCF complex SKP1 subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W233_GALSU)

HSP 1 Score: 177 bits (449), Expect = 3.220e-54
Identity = 88/153 (57.52%), Postives = 114/153 (74.51%), Query Frame = 0
Query:    9 NSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            NS T+KL S D EIFEVE ++      +K +LED ++ +   IP+  VE  ILAKVVEYCR+H   +    S ++++RW+R F+ VD+ TLF LILAAN+LD++SLLDLTCK VADMIKGK PE+IR EF+I NDFTPE+ EEVRR+NAWC +
Sbjct:    4 NSKTVKLVSSDNEIFEVETSIISLSETIKNVLEDTEDTES--IPLPNVEGRILAKVVEYCRYHSLLKTIPQSEEDIERWDREFLNVDQPTLFHLILAANYLDIKSLLDLTCKRVADMIKGKKPEEIRKEFNIVNDFTPEEEEEVRRENAWCED 154          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A5J4YW41_PORPP (SCF ubiquitin ligase complex protein SKP1a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW41_PORPP)

HSP 1 Score: 176 bits (446), Expect = 9.800e-54
Identity = 90/149 (60.40%), Postives = 112/149 (75.17%), Query Frame = 0
Query:   15 LRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            L S D E F VE+ VA     V  +LEDV E +   IP+  VE+AILAKV+EYCR+HY  + N  S +++D+W + FV+VDK TLF LILAAN++D+QSLLDLTCK+VADMIKGK+ EQIR EF I NDFTPE+ EE+RR+NAW  EDR
Sbjct:   11 LVSSDNETFNVERGVANVSGLVANVLEDVSE-EETTIPIPNVESAILAKVIEYCRYHYHLQSNPQSDEDIDKWNKEFVRVDKPTLFHLILAANYMDIQSLLDLTCKSVADMIKGKSAEQIRGEFGIVNDFTPEEEEEIRRENAW-VEDR 157          
BLAST of Gvermi6925.t1 vs. uniprot
Match: R1ERE6_EMIHU (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=R1ERE6_EMIHU)

HSP 1 Score: 171 bits (434), Expect = 6.520e-52
Identity = 86/156 (55.13%), Postives = 114/156 (73.08%), Query Frame = 0
Query:    6 NQANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            + + +  +KL+SK  EIFEVEK VA +   VK M+ED      + +PM  V++ IL KV+EYC++H++ E      DE + W++ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:    3 DDSEATAVKLKSKQEEIFEVEKEVACRSVTVKNMVEDTGLDTPVPLPM--VDSKILIKVIEYCKYHHRAEQESLPEDEKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A8J5XJL0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJL0_DIALT)

HSP 1 Score: 170 bits (431), Expect = 1.920e-51
Identity = 85/156 (54.49%), Postives = 113/156 (72.44%), Query Frame = 0
Query:    6 NQANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            ++  S  +KL+SK  E+FEVE+ VA +   VK M+ED      + +PM  V++ IL KV+EYC++H+  E  +   +E   WE+ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:    4 DEEQSPFIKLKSKQEELFEVEREVACRSVTVKNMVEDTGSDTPVPLPM--VDSRILTKVIEYCKYHHGSETARVPEEEKANWEKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRVRFNITNDFTPEEEEEVKRENAWCEE 157          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A0D6QSJ7_ARACU (SKP1-like protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QSJ7_ARACU)

HSP 1 Score: 169 bits (427), Expect = 6.650e-51
Identity = 85/154 (55.19%), Postives = 114/154 (74.03%), Query Frame = 0
Query:   12 TLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVD--RWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            TL+L+S D +IFEVE+AVA +   +K M+ED+    G++  +P+  V   ILA+VVEYCR+H +   N +S  E D  RW   FV VD++TLF LILAAN+L+++SLLDLTC+TVADMIKGKTPE+IR  F+I NDFTPE+ EE++ +NAW  E
Sbjct:    4 TLRLKSSDDQIFEVEEAVAFESQTIKNMIEDI----GIDTTVPLFNVSGKILARVVEYCRYHVEANRNNSSLSEEDFKRWNEEFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIKHENAWAFE 153          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A7S0QBC9_9EUKA (Hypothetical protein n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0QBC9_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 3.050e-50
Identity = 83/151 (54.97%), Postives = 113/151 (74.83%), Query Frame = 0
Query:   13 LKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            +KL+SK  EIFEV+K VA +   V+ M+ED     G++  +P+  V++ IL KV+EYC++H++ E      D+ + W++ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:   10 VKLKSKQEEIFEVDKEVACRSVTVRNMVEDT----GLDAPVPLPMVDSKILIKVIEYCKYHHRAEAEALPEDDKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Gvermi6925.t1 vs. uniprot
Match: A0A5P1EF66_ASPOF (SKP1-like protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EF66_ASPOF)

HSP 1 Score: 166 bits (420), Expect = 8.450e-50
Identity = 85/157 (54.14%), Postives = 116/157 (73.89%), Query Frame = 0
Query:    8 ANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELN---QTSADEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            A+   + L+S DGEIFEV++ VAM+   +K M+ED     G  IP+  V + ILAKV+EYC+ H ++  +   +T+ADE+  W+  FV+VD++TLF LILAAN+L+++ LLDLTC+TVADMIKGKTPE+IR  F+I NDFTPE+ EEVRR+N W  E
Sbjct:    2 ASEKKITLKSSDGEIFEVDQEVAMESQTIKHMIEDDCAESG--IPLPNVNSKILAKVIEYCKKHVEKGSSSDEKTAADEIKAWDEEFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRQTFNIKNDFTPEEEEEVRRENQWAFE 156          
The following BLAST results are available for this feature:
BLAST of Gvermi6925.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWB5_9FLOR2.000e-10593.25SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda... [more]
R7QD44_CHOCR1.130e-9386.16Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZFH6_9RHOD1.570e-5560.40Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2W233_GALSU3.220e-5457.52E3 ubiquitin ligase SCF complex SKP1 subunit n=1 T... [more]
A0A5J4YW41_PORPP9.800e-5460.40SCF ubiquitin ligase complex protein SKP1a n=1 Tax... [more]
R1ERE6_EMIHU6.520e-5255.13Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A8J5XJL0_DIALT1.920e-5154.49Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0D6QSJ7_ARACU6.650e-5155.19SKP1-like protein n=2 Tax=Araucariaceae TaxID=2566... [more]
A0A7S0QBC9_9EUKA3.050e-5054.97Hypothetical protein n=2 Tax=Prymnesiophyceae TaxI... [more]
A0A5P1EF66_ASPOF8.450e-5054.14SKP1-like protein n=1 Tax=Asparagus officinalis Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 10..111
e-value: 1.2E-30
score: 117.9
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 112..159
e-value: 6.1E-25
score: 87.0
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 13..72
e-value: 1.1E-19
score: 70.3
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 7..162
e-value: 1.9E-57
score: 195.9
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 13..74
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..162
e-value: 4.2E-54
score: 180.7
IPR016897S-phase kinase-associated protein 1PANTHERPTHR11165SKP1coord: 13..160
NoneNo IPR availablePANTHERPTHR11165:SF122SUBFAMILY NOT NAMEDcoord: 13..160
NoneNo IPR availableCDDcd18322BTB_POZ_SKP1coord: 12..126
e-value: 8.48697E-46
score: 144.272
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILY81382Skp1 dimerisation domain-likecoord: 85..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:589389..590100 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6925.t1Gvermi6925.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 589389..590100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6925.t1 ID=Gvermi6925.t1|Name=Gvermi6925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MAETPNQANSITLKLRSKDGEIFEVEKAVAMQINFVKGMLEDVDEVDGME
IPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLF
QLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLE
EVRRDNAWCAEDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ_sf
IPR016897SKP1
IPR036296SKP1-like_dim_sf