Gvermi6896.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6896.t1
Unique NameGvermi6896.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length412
Homology
BLAST of Gvermi6896.t1 vs. uniprot
Match: A0A2V3IX96_9FLOR (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX96_9FLOR)

HSP 1 Score: 436 bits (1122), Expect = 1.190e-148
Identity = 251/424 (59.20%), Postives = 313/424 (73.82%), Query Frame = 0
Query:    1 MDDDWASEGEEEGLGDLSDIPDIDIPPQQRQNPGPPHKSQLPPTAVRPP----PRQNAWTKPIQSQQVRSAAQQP----QQPRGH--HRRQNSFPSSFASKSDRFDSDPQRLERRTSNVPTTNLYVANLPYETHEQAIGDFFNVNTIDVFGIRIMRHSDTGKIKAALVTIPTDHVPRALATDGKLFGGRAMHVKVDGTDGKRGGRDKDRGERSHGKNPAF-ASFGTRAPP-NGSSRPGSAWNDRGPGLSFDSQLSRRPSDTSREDRRSRAGSHSRDLTIPTGPPPAGRKKLQLMPRTKPTPSMPVNKRNANQPSAPQTVVPAPGRQENESFPQAKGSGAPRKGNSAGADRVN-RNDRDAEKFDKVERRDRGGKASEEPASKWTNSKETNISRQSSQPTSKKEDETKRPVLLNTFAALELNDSDA 411
            MDDDWASEGEEEGLGDLSDIPD+D+P Q         K+ LP    +PP    PRQNAWTKP QSQQVRSA Q P    QQP+G   HRRQNSFP+SF S  +R      R + R+   PTT LYV NLPY+THEQAIGDFF  +++ V GIR+++H DTG I+AALVT+  DHVP+ALA DG++FGGR ++VK+DGTDGKRG R    GERS  +NP+F +SFGTRAPP NG++R  S+W+DRGPG S DSQL+RR SD  R+DRRSR    ++D +IP GPPPAGRKKLQLMPRTKP P + V++R  +Q   PQ+ +PAPGRQ++E F Q +    PR+ NS G +R + R DR +++FD+V+RRDRG +  ++  +KWTNSKET  SR SSQPT+KKED++KRPVL NTFAAL++ D DA
Sbjct:    1 MDDDWASEGEEEGLGDLSDIPDVDLPVQI--------KTPLPEPTPQPPAPVVPRQNAWTKPNQSQQVRSAVQSPAQHQQQPQGRALHRRQNSFPASFGSNLERPSQPAPRHQPRSHTGPTTTLYVTNLPYQTHEQAIGDFFTASSVHVVGIRLVKHPDTGNIRAALVTVVADHVPKALAVDGRMFGGRTIYVKIDGTDGKRGAR----GERSQSRNPSFGSSFGTRAPPLNGNARS-SSWHDRGPGHSIDSQLTRRASDN-RDDRRSRLAPLAKDPSIPVGPPPAGRKKLQLMPRTKPPPELQVDQRAISQQKPPQSAMPAPGRQDSEKFSQNRAGPPPRRVNSYGGERSSTRGDRSSDRFDRVDRRDRGPRM-DDSRNKWTNSKETATSRPSSQPTAKKEDDSKRPVLQNTFAALDIKDPDA 409          
BLAST of Gvermi6896.t1 vs. uniprot
Match: R7Q424_CHOCR (Possible translation initiation factor eIF4, subunit H n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q424_CHOCR)

HSP 1 Score: 135 bits (341), Expect = 1.240e-32
Identity = 129/346 (37.28%), Postives = 172/346 (49.71%), Query Frame = 0
Query:   99 PQRLERRTSNVP---TTNLYVANLPYETHEQAIGDFFNVNTIDVFGIRIMRHSDTGKIKAALVTIP-TDHVPRALATDGKLFGGRAMHVKVDGTDGKRGGRDKDRGERSHGKNPAFASFGTRAPPNGSSRPG---SAWNDRGPGLSFDSQLSRRPSDTSREDRRSR--------AGSHSRDLTIPTGPPPAGRKKLQLMPRTKPTPSMPVNKRNAN--QPSAPQTVVPAPGRQEN----ESFPQAKGSG----APRKGNSAGADRVNRNDRDAEKFD-KVER----RDRGGKASEEPASKWTNSKETNISRQS--SQPTSKKEDETK-RPVLLNTFAALELNDSDA 411
            P+R     ++ P   TT LYV +LP++T E  I   F    +    + + RH+DTG IKAALVTI   +++   LA DG    GR +HVKVDG     GG  ++R     G           + P+G  R     S W DR  G  FD           R    SR        A     D TIPTGPPPAGRKKL L PRTKP P + V+ R  +  +PS P +V     R EN    ++    + SG    AP    S GAD    N ++    D KVE+    +D   K   E   +W+++KE    + S  +Q ++KK+D++K RPVLLNTFAALE+ND+DA
Sbjct:   27 PRRQPSSPASAPAGSTTTLYVFHLPFDTSEVEIASLFRHCAVTPADVHLTRHNDTGNIKAALVTIRGEENLSAGLAVDGAKLSGRPVHVKVDGDRRGSGGGQRERSGYGFGSKDRRMEAMPSSSPHGGQRDSTWSSGWTDRSGGGGFDQSSRGERGVEGRSAGASRGAGVTPRGASEQREDPTIPTGPPPAGRKKLVLKPRTKPPPVLEVDTRAIDGVKPSVPSSVSQPRHRFENSDPSKNLAMRQNSGPRVTAPL---SEGADP---NPKEVTPADPKVEKWTTPKDATAKTQGE---RWSSAKEGAPQKASGTAQGSNKKDDDSKKRPVLLNTFAALEVNDADA 363          
The following BLAST results are available for this feature:
BLAST of Gvermi6896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX96_9FLOR1.190e-14859.20RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7Q424_CHOCR1.240e-3237.28Possible translation initiation factor eIF4, subun... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 86..233
e-value: 3.0E-11
score: 45.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..312
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 112..188
score: 8.50115
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 93..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:385746..386981 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6896.t1Gvermi6896.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 385746..386981 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6896.t1 ID=Gvermi6896.t1|Name=Gvermi6896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=412bp
MDDDWASEGEEEGLGDLSDIPDIDIPPQQRQNPGPPHKSQLPPTAVRPPP
RQNAWTKPIQSQQVRSAAQQPQQPRGHHRRQNSFPSSFASKSDRFDSDPQ
RLERRTSNVPTTNLYVANLPYETHEQAIGDFFNVNTIDVFGIRIMRHSDT
GKIKAALVTIPTDHVPRALATDGKLFGGRAMHVKVDGTDGKRGGRDKDRG
ERSHGKNPAFASFGTRAPPNGSSRPGSAWNDRGPGLSFDSQLSRRPSDTS
REDRRSRAGSHSRDLTIPTGPPPAGRKKLQLMPRTKPTPSMPVNKRNANQ
PSAPQTVVPAPGRQENESFPQAKGSGAPRKGNSAGADRVNRNDRDAEKFD
KVERRDRGGKASEEPASKWTNSKETNISRQSSQPTSKKEDETKRPVLLNT
FAALELNDSDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf