Gvermi6893.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6893.t1
Unique NameGvermi6893.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length382
Homology
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A2V3IUB1_9FLOR (Ribosomal RNA small subunit methyltransferase NEP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUB1_9FLOR)

HSP 1 Score: 384 bits (987), Expect = 1.540e-129
Identity = 189/246 (76.83%), Postives = 213/246 (86.59%), Query Frame = 0
Query:  140 PHPLPVDHAKKIKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQREL----HEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            P+ LP +HAKKIKVTVLLENANLETV+Q+GR GGFVLLN DDHRHLL KTGRNANDARPDITHQCLL LLDSPLNKEGRLKVY+RT+KNVLIDV+ ETRIPRT  RF+GLM ELLEKLKVRGT+GSTPLL+VIRNPI SHLPVGTRK+VCTYNTENV+D+REH+  +A +V       L    +++  +A  GEEVN+LYVVGAMAHGK+ EDWADEYICISEYPLSAA VC RIT+AYE LFGI+
Sbjct:  105 PNALPSEHAKKIKVTVLLENANLETVRQSGRAGGFVLLNSDDHRHLLRKTGRNANDARPDITHQCLLALLDSPLNKEGRLKVYVRTSKNVLIDVNSETRIPRTFTRFAGLMTELLEKLKVRGTSGSTPLLRVIRNPIVSHLPVGTRKVVCTYNTENVMDMREHSRRIADLVDAKDSNGLSGNDNKQRTIADDGEEVNILYVVGAMAHGKIEEDWADEYICISEYPLSAATVCSRITHAYECLFGIL 350          
BLAST of Gvermi6893.t1 vs. uniprot
Match: R7QNV2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNV2_CHOCR)

HSP 1 Score: 375 bits (963), Expect = 6.920e-126
Identity = 177/235 (75.32%), Postives = 205/235 (87.23%), Query Frame = 0
Query:  147 HAKKIKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            HAKK+ VTVLLE ANLETVKQ+GR GG VLLNC+DHRH+L K+GR+ANDARPDITHQCLL L+DSPLNK GRLKVYIRTAKNVLI+VHP+TR+PRT++RFSGLMAELLEK KVRGT+GSTPLLKVIRNPI SHLPVGTRK+VCTYNT+N+VD+REHA  +AA+ +P       +E  + +  EEVNVLYV+GAMAHGKV EDWAD+ IC+SEYPLSAA VC R+TY YE LFGI+
Sbjct:  117 HAKKVNVTVLLERANLETVKQSGRSGGMVLLNCEDHRHVLKKSGRDANDARPDITHQCLLALMDSPLNKAGRLKVYIRTAKNVLIEVHPQTRVPRTIRRFSGLMAELLEKFKVRGTSGSTPLLKVIRNPITSHLPVGTRKVVCTYNTDNIVDMREHAAKMAALAIPEGLNVGEDEEAIEEQAEEVNVLYVIGAMAHGKVSEDWADDNICVSEYPLSAATVCSRLTYTYECLFGIL 351          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A1X6NRB7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRB7_PORUM)

HSP 1 Score: 280 bits (716), Expect = 6.420e-88
Identity = 143/235 (60.85%), Postives = 168/235 (71.49%), Query Frame = 0
Query:  148 AKKIKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNAND-ARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            AK  KV V+LENANLETVK +     + LLN DDH  LL KT R+AN  ARPDITHQCLL L+DSPLNK   L VYIR+ K VLI VHPETRIPRT KRF+GLM ELL KLKVR T GSTPLL+V+ NPI SHLPVG ++++C+Y+TENVVD+R HAL    +          E     + G EV+V YV+GAMAHGKV  DW +E IC+SEY LSAA VC R+ YAYE   G++
Sbjct:  165 AKAAKVIVVLENANLETVKPSAHATAYQLLNSDDHVGLLRKTRRDANTHARPDITHQCLLALMDSPLNKASHLAVYIRSVKGVLIRVHPETRIPRTAKRFAGLMVELLHKLKVRSTGGSTPLLQVVANPITSHLPVGCKRVLCSYHTENVVDMRAHALASLRVAPXXXXXXXXEAARREREGAEVSVCYVIGAMAHGKVDADWVEETICVSEYTLSAATVCSRLVYAYECALGVL 399          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A5J4YGY8_PORPP (Ribosomal RNA small subunit methyltransferase NEP1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YGY8_PORPP)

HSP 1 Score: 271 bits (692), Expect = 1.940e-85
Identity = 141/238 (59.24%), Postives = 171/238 (71.85%), Query Frame = 0
Query:  146 DHAKKIKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVN-VLYVVGAMAHGKVVEDWA-DEYICISEYPLSAANVCGRITYAYENLFGIM 381
            D  K  KV VLLE ANLE VK  GR GG+ LLN DDH++L  K+GR+  D RPDITHQCLL L DSPLNK GRLKV++RT KNVLID+HP+TR+PRTMKRFSGL+ ELL+KLKVR T  + PLLKVIRNP+ SHLPVG RK++ TYNT+NV+D   HA  V++                +  G  V+ VLYVVGA+AHGKV  +W  DE I I  +PLSAANVC ++T A+E+  GI+
Sbjct:   93 DVPKAFKVYVLLEQANLEVVKV-GREGGYQLLNADDHQNLARKSGRDLADCRPDITHQCLLALFDSPLNKAGRLKVFVRTRKNVLIDIHPDTRLPRTMKRFSGLIVELLQKLKVRATNAADPLLKVIRNPVTSHLPVGCRKVLMTYNTDNVIDTLSHAHRVSS--------------EASAEGSTVSSVLYVVGAIAHGKVDLEWGTDEEISIGNFPLSAANVCSKVTQAFEHTLGIL 315          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A7S0BQR3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQR3_9RHOD)

HSP 1 Score: 225 bits (573), Expect = 4.260e-68
Identity = 112/230 (48.70%), Postives = 155/230 (67.39%), Query Frame = 0
Query:  152 KVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            KV V+L+ ANLE VK+  RG G  LL  D+H+ ++ ++G++  + RPD+ HQCLL LLDSPLNK G L+VY+RT+KNVLI++HP+ R+PRT +RFSGLMAELL K K+R T     L+KVIRNPI SHLPVG+ K   ++N+E +V++ +HA  +       + R+              +V+YV+GAMA GKV  DW ++ + IS YPLS A VC R+ +AYE    I+
Sbjct:   65 KVIVVLDCANLEVVKRQ-RGSGSTLLAADEHKGIIKRSGKDPAEVRPDVAHQCLLALLDSPLNKRGHLQVYVRTSKNVLIELHPQLRLPRTFRRFSGLMAELLNKFKIRATNSQDTLMKVIRNPITSHLPVGSAKFAFSFNSEKMVNVVDHAKEIV------ETRDCE------------SVVYVIGAMAKGKVEADWVEDTLSISNYPLSGACVCNRLAHAYELALNIL 275          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A7S0ZKE1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKE1_9RHOD)

HSP 1 Score: 218 bits (556), Expect = 5.200e-66
Identity = 107/155 (69.03%), Postives = 129/155 (83.23%), Query Frame = 0
Query:  152 KVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNV 306
            KV VLL++ANLETVK  G+ GG+ LLN DDH+ +L +  R+  +ARPDITHQCLL L+DSPLNK G+LKVYIRT KNVLID+HP+TRIPRTMKRFSGLM ELL+KLK+R T    PLLKVIRNPI SHLPVG RK++ TYN +N+VD++EHA N+
Sbjct:   86 KVIVLLDSANLETVKV-GKEGGYQLLNQDDHQSILARHRRDPAEARPDITHQCLLALMDSPLNKAGKLKVYIRTRKNVLIDIHPDTRIPRTMKRFSGLMVELLQKLKIRATNSPHPLLKVIRNPITSHLPVGCRKVLMTYNCDNLVDLQEHAQNI 239          
BLAST of Gvermi6893.t1 vs. uniprot
Match: T2M847_HYDVU (Ribosomal RNA small subunit methyltransferase NEP1 (Fragment) n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M847_HYDVU)

HSP 1 Score: 216 bits (551), Expect = 2.200e-65
Identity = 114/247 (46.15%), Postives = 159/247 (64.37%), Query Frame = 0
Query:  134 PMHGKLPHPLPVDHAKKIKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGI 380
            P   K+P  L  + + K ++ V+LENA+LETVK    G  F L+NCDDH++++ K GR+  ++RPDITHQCLL L+DSPLN+ G L+VYI T KNVLI+++P+TRIPRT  RFSGLM +LL KL +    G   L+KVI+NP+  H P G RKIV T+  +  V++R+         +P                ++ +V+ V+GAMAHGKV  ++ +E I ISEYPLSAA  C +I   +E ++GI
Sbjct:   14 PTPSKIPKVLKQNDSGK-RLIVVLENASLETVKS---GKNFELMNCDDHKNIIKKHGRDPANSRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFNRFSGLMVQLLHKLSIHAANGPVKLMKVIKNPVDDHFPAGCRKIVATFQAKKCVNVRD---------IP----------------KDESVVIVIGAMAHGKVEVNYGEEEIAISEYPLSAALTCAKICSGFEEVWGI 231          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A212F0X4_DANPL (Nep1 protein n=19 Tax=Obtectomera TaxID=104431 RepID=A0A212F0X4_DANPL)

HSP 1 Score: 216 bits (549), Expect = 4.980e-65
Identity = 114/245 (46.53%), Postives = 158/245 (64.49%), Query Frame = 0
Query:  139 LPHPLPVDHAKKI--KVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            +P  L   H KK   ++ V+LENA+LETVK    G  F LLNCDDH H+L K  R+    RPDI HQ LL L+DSPLN+ G L+VYI T KNVLI+++P+TRIPRT KRF+GLM +LL K  +R + G   LLKVI+NPI SHLPVG +KI  +++++ V + RE        ++P                ++  ++ +VGAMAHGKV  D++++ I IS YPLSAA  C ++  A+E ++G++
Sbjct:   19 IPRHLVTSHIKKQEKRLIVILENAHLETVKS---GNSFELLNCDDHGHILRKNDRDPGSCRPDIAHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPITSHLPVGVKKITMSFSSKMVKNCRE--------LVP----------------QDEPIVLIVGAMAHGKVEVDYSEDVISISNYPLSAALTCAKVCSAFEEVWGVV 236          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A0L0HFA2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HFA2_SPIPD)

HSP 1 Score: 215 bits (547), Expect = 8.750e-65
Identity = 116/233 (49.79%), Postives = 149/233 (63.95%), Query Frame = 0
Query:  152 KVTVLLENANLETVKQN-GRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHG--KVVEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            ++ V+L+ A+LETVK   G+ G + LLNCDDH HLL K G++ +++RPDITHQCLLTLLDSPLNK G L+VYI T KNVLI+V+P  RIPRT KRF GLM +LL KL +R   G   LLKVI+NPI  HLP   RKI  +   + V       LN     LP+ +                 V+Y +GAMAHG    V+D  D+ I ISEYPLSA+  CG++T AYE ++ ++
Sbjct:   22 RLIVVLQQASLETVKLGKGKEGHYALLNCDDHHHLLKKHGKDVSESRPDITHQCLLTLLDSPLNKAGLLQVYIHTTKNVLIEVNPHVRIPRTFKRFCGLMVQLLHKLSIRSVNGPEKLLKVIKNPITDHLPPNCRKITMSSEVQAV------RLNSYVATLPSDEP----------------VVYFIGAMAHGPDNWVDDIVDDKISISEYPLSASVTCGKLTCAYEEMWNVL 232          
BLAST of Gvermi6893.t1 vs. uniprot
Match: A0A507E013_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E013_9FUNG)

HSP 1 Score: 213 bits (542), Expect = 4.920e-64
Identity = 119/244 (48.77%), Postives = 154/244 (63.11%), Query Frame = 0
Query:  142 PLPVDHAKKIK-VTVLLENANLETVKQN-GRGGGFVLLNCDDHRHLLHKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIREHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKV--VEDWADEYICISEYPLSAANVCGRITYAYENLFGIM 381
            P PV      K + V+LE A+LETVK   G+ G + LLNCDDH HLL K G++ +++RPDITHQCLLTLLDSPLNK G L+VYI+T KNVLI+V+P  RIPRT KRFSGLM +LL KL +R   G   LLKVI+NPI  HLP   RKI  +       D+    L      LP                ++  V++ +GAMAHG    V+D  D+ I +SEYPLSA+  CG++T A+E+++ I+
Sbjct:   11 PKPVKEKSSAKRLIVVLEQASLETVKLGKGKEGYYALLNCDDHHHLLKKHGKDVSESRPDITHQCLLTLLDSPLNKAGLLQVYIQTTKNVLIEVNPHVRIPRTFKRFSGLMVQLLHKLSIRAVNGPEKLLKVIKNPITDHLPPNARKITMSS------DVPAVRLGPYVTSLP----------------KDEPVVFFIGAMAHGADTWVDDIVDDKISVSEYPLSASVTCGKLTCAFEDMWNIL 232          
The following BLAST results are available for this feature:
BLAST of Gvermi6893.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUB1_9FLOR1.540e-12976.83Ribosomal RNA small subunit methyltransferase NEP1... [more]
R7QNV2_CHOCR6.920e-12675.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NRB7_PORUM6.420e-8860.85Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YGY8_PORPP1.940e-8559.24Ribosomal RNA small subunit methyltransferase NEP1... [more]
A0A7S0BQR3_9RHOD4.260e-6848.70Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZKE1_9RHOD5.200e-6669.03Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
T2M847_HYDVU2.200e-6546.15Ribosomal RNA small subunit methyltransferase NEP1... [more]
A0A212F0X4_DANPL4.980e-6546.53Nep1 protein n=19 Tax=Obtectomera TaxID=104431 Rep... [more]
A0A0L0HFA2_SPIPD8.750e-6549.79Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A507E013_9FUNG4.920e-6448.77Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1PFAMPF03587EMG1coord: 155..375
e-value: 1.6E-71
score: 240.2
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1PANTHERPTHR12636NEP1/MRA1coord: 145..380
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1CDDcd18088Nep1-likecoord: 153..375
e-value: 2.36374E-99
score: 291.741
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 153..381
e-value: 2.3E-77
score: 261.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..145
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 146..380

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:377323..378468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1Gvermi6893.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 377323..378468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=382bp
MGSLTAGRKAKRCAENASPNGSTKRKRPQMPSPHIQPRLLNVLTGNDTRQ
TDDAESFGQNPNVRASEKKADEIGKQNGGGEVAQLHSATKSSGTSSLGEE
TGDAGGDKSDHLGTLEAPDPHPTADSAQNVRAEPMHGKLPHPLPVDHAKK
IKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDI
THQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLM
AELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIR
EHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWA
DEYICISEYPLSAANVCGRITYAYENLFGIM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005304Rbsml_bgen_MeTrfase_EMG1/NEP1
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases