Gvermi6893.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6893.t1
Unique NameGvermi6893.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:377323..378468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ70754
Preferred nameEMG1
PFAMsEMG1
Max annot lvl33208|Metazoa
KEGG koko:K14568
KEGG Pathwayko03008,map03008
GOsGO:0000154,GO:0000462,GO:0001510,GO:0001701,GO:0001824,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0017126,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0031167,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042742,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0070013,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1990904
Evalue4.31e-66
EggNOG OGsCOG1756@1|root,KOG3073@2759|Eukaryota,38BYT@33154|Opisthokonta,3BGXS@33208|Metazoa,3CV7K@33213|Bilateria,41TXD@6656|Arthropoda,3SJ8P@50557|Insecta,448QX@7088|Lepidoptera
EC2.1.1.260
DescriptionEMG1/NEP1 methyltransferase
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6893Gvermi6893Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 377323..378468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1.stop1Gvermi6893.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 377323..377325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1.CDS1Gvermi6893.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 377323..378468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1.exon1Gvermi6893.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 377323..378468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1.start1Gvermi6893.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 378466..378468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6893.t1Gvermi6893.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 377323..378468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=382bp
MGSLTAGRKAKRCAENASPNGSTKRKRPQMPSPHIQPRLLNVLTGNDTRQ
TDDAESFGQNPNVRASEKKADEIGKQNGGGEVAQLHSATKSSGTSSLGEE
TGDAGGDKSDHLGTLEAPDPHPTADSAQNVRAEPMHGKLPHPLPVDHAKK
IKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDI
THQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLM
AELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIR
EHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWA
DEYICISEYPLSAANVCGRITYAYENLFGIM*
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spliced messenger RNA

>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24229:377323..378468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCTTAACGGCTGGTCGAAAAGCGAAAAGATGCGCGGAAAACGC
AAGTCCGAACGGCTCCACGAAGCGCAAGAGACCGCAGATGCCGTCGCCTC
ACATTCAGCCGCGTCTGCTGAACGTTTTGACCGGCAACGACACGCGACAA
ACTGATGACGCAGAGTCATTTGGTCAGAACCCAAATGTGCGCGCGTCGGA
AAAGAAAGCGGACGAAATCGGGAAGCAGAATGGAGGTGGTGAGGTTGCGC
AGCTGCACTCTGCGACGAAGAGCAGTGGTACCAGTTCTCTGGGCGAGGAA
ACCGGGGATGCCGGTGGAGACAAAAGTGACCACTTAGGGACACTGGAAGC
TCCCGATCCGCACCCGACAGCCGACTCTGCGCAGAACGTCCGTGCGGAGC
CGATGCATGGGAAACTGCCACACCCTCTACCCGTCGACCATGCGAAAAAG
ATCAAAGTAACCGTACTTTTGGAAAACGCCAATTTAGAAACCGTCAAGCA
GAACGGGCGTGGAGGCGGCTTTGTTCTGTTGAACTGTGACGACCATCGTC
ATCTGCTCCACAAGACAGGTCGCAACGCGAATGATGCGCGTCCAGATATA
ACTCATCAATGTCTGTTGACGTTACTGGATAGCCCCTTGAACAAAGAAGG
TCGTTTGAAAGTTTACATTCGCACAGCTAAGAACGTCTTGATTGACGTGC
ACCCGGAAACAAGAATTCCGCGCACCATGAAGCGATTCTCCGGGCTCATG
GCTGAGCTGTTGGAGAAGCTCAAGGTGCGAGGCACGACAGGCTCTACCCC
CTTGTTAAAGGTAATTCGTAATCCCATCGCCAGTCATCTCCCCGTCGGAA
CGCGAAAGATCGTTTGCACGTACAACACTGAGAATGTTGTCGACATTCGA
GAGCATGCGCTAAATGTTGCGGCCATGGTGCTGCCAGCAAAGCAGCGTGA
ATTGCACGAGGAGTTCAATGTGGCGCAGCACGGAGAGGAGGTGAATGTCT
TGTACGTTGTTGGTGCAATGGCTCATGGGAAAGTTGTAGAGGATTGGGCG
GACGAATATATATGCATAAGCGAGTACCCCCTCTCTGCTGCTAATGTGTG
TGGAAGAATCACATATGCGTACGAGAATCTCTTCGGCATCATGTAA
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protein sequence of Gvermi6893.t1

>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=382bp
MGSLTAGRKAKRCAENASPNGSTKRKRPQMPSPHIQPRLLNVLTGNDTRQ
TDDAESFGQNPNVRASEKKADEIGKQNGGGEVAQLHSATKSSGTSSLGEE
TGDAGGDKSDHLGTLEAPDPHPTADSAQNVRAEPMHGKLPHPLPVDHAKK
IKVTVLLENANLETVKQNGRGGGFVLLNCDDHRHLLHKTGRNANDARPDI
THQCLLTLLDSPLNKEGRLKVYIRTAKNVLIDVHPETRIPRTMKRFSGLM
AELLEKLKVRGTTGSTPLLKVIRNPIASHLPVGTRKIVCTYNTENVVDIR
EHALNVAAMVLPAKQRELHEEFNVAQHGEEVNVLYVVGAMAHGKVVEDWA
DEYICISEYPLSAANVCGRITYAYENLFGIM*
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mRNA from alignment at ScGOVlb_24229:377323..378468-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24229:377323..378468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGCTTAACGGCTGGTCGAAAAGCGAAAAGATGCGCGGAAAACGC
AAGTCCGAACGGCTCCACGAAGCGCAAGAGACCGCAGATGCCGTCGCCTC
ACATTCAGCCGCGTCTGCTGAACGTTTTGACCGGCAACGACACGCGACAA
ACTGATGACGCAGAGTCATTTGGTCAGAACCCAAATGTGCGCGCGTCGGA
AAAGAAAGCGGACGAAATCGGGAAGCAGAATGGAGGTGGTGAGGTTGCGC
AGCTGCACTCTGCGACGAAGAGCAGTGGTACCAGTTCTCTGGGCGAGGAA
ACCGGGGATGCCGGTGGAGACAAAAGTGACCACTTAGGGACACTGGAAGC
TCCCGATCCGCACCCGACAGCCGACTCTGCGCAGAACGTCCGTGCGGAGC
CGATGCATGGGAAACTGCCACACCCTCTACCCGTCGACCATGCGAAAAAG
ATCAAAGTAACCGTACTTTTGGAAAACGCCAATTTAGAAACCGTCAAGCA
GAACGGGCGTGGAGGCGGCTTTGTTCTGTTGAACTGTGACGACCATCGTC
ATCTGCTCCACAAGACAGGTCGCAACGCGAATGATGCGCGTCCAGATATA
ACTCATCAATGTCTGTTGACGTTACTGGATAGCCCCTTGAACAAAGAAGG
TCGTTTGAAAGTTTACATTCGCACAGCTAAGAACGTCTTGATTGACGTGC
ACCCGGAAACAAGAATTCCGCGCACCATGAAGCGATTCTCCGGGCTCATG
GCTGAGCTGTTGGAGAAGCTCAAGGTGCGAGGCACGACAGGCTCTACCCC
CTTGTTAAAGGTAATTCGTAATCCCATCGCCAGTCATCTCCCCGTCGGAA
CGCGAAAGATCGTTTGCACGTACAACACTGAGAATGTTGTCGACATTCGA
GAGCATGCGCTAAATGTTGCGGCCATGGTGCTGCCAGCAAAGCAGCGTGA
ATTGCACGAGGAGTTCAATGTGGCGCAGCACGGAGAGGAGGTGAATGTCT
TGTACGTTGTTGGTGCAATGGCTCATGGGAAAGTTGTAGAGGATTGGGCG
GACGAATATATATGCATAAGCGAGTACCCCCTCTCTGCTGCTAATGTGTG
TGGAAGAATCACATATGCGTACGAGAATCTCTTCGGCATCATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:377323..378468-

>Gvermi6893.t1 ID=Gvermi6893.t1|Name=Gvermi6893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24229:377323..378468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGCTTAACGGCTGGTCGAAAAGCGAAAAGATGCGCGGAAAACGC
AAGTCCGAACGGCTCCACGAAGCGCAAGAGACCGCAGATGCCGTCGCCTC
ACATTCAGCCGCGTCTGCTGAACGTTTTGACCGGCAACGACACGCGACAA
ACTGATGACGCAGAGTCATTTGGTCAGAACCCAAATGTGCGCGCGTCGGA
AAAGAAAGCGGACGAAATCGGGAAGCAGAATGGAGGTGGTGAGGTTGCGC
AGCTGCACTCTGCGACGAAGAGCAGTGGTACCAGTTCTCTGGGCGAGGAA
ACCGGGGATGCCGGTGGAGACAAAAGTGACCACTTAGGGACACTGGAAGC
TCCCGATCCGCACCCGACAGCCGACTCTGCGCAGAACGTCCGTGCGGAGC
CGATGCATGGGAAACTGCCACACCCTCTACCCGTCGACCATGCGAAAAAG
ATCAAAGTAACCGTACTTTTGGAAAACGCCAATTTAGAAACCGTCAAGCA
GAACGGGCGTGGAGGCGGCTTTGTTCTGTTGAACTGTGACGACCATCGTC
ATCTGCTCCACAAGACAGGTCGCAACGCGAATGATGCGCGTCCAGATATA
ACTCATCAATGTCTGTTGACGTTACTGGATAGCCCCTTGAACAAAGAAGG
TCGTTTGAAAGTTTACATTCGCACAGCTAAGAACGTCTTGATTGACGTGC
ACCCGGAAACAAGAATTCCGCGCACCATGAAGCGATTCTCCGGGCTCATG
GCTGAGCTGTTGGAGAAGCTCAAGGTGCGAGGCACGACAGGCTCTACCCC
CTTGTTAAAGGTAATTCGTAATCCCATCGCCAGTCATCTCCCCGTCGGAA
CGCGAAAGATCGTTTGCACGTACAACACTGAGAATGTTGTCGACATTCGA
GAGCATGCGCTAAATGTTGCGGCCATGGTGCTGCCAGCAAAGCAGCGTGA
ATTGCACGAGGAGTTCAATGTGGCGCAGCACGGAGAGGAGGTGAATGTCT
TGTACGTTGTTGGTGCAATGGCTCATGGGAAAGTTGTAGAGGATTGGGCG
GACGAATATATATGCATAAGCGAGTACCCCCTCTCTGCTGCTAATGTGTG
TGGAAGAATCACATATGCGTACGAGAATCTCTTCGGCATCATGTAA
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