Gvermi6890.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6890.t1
Unique NameGvermi6890.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length395
Homology
BLAST of Gvermi6890.t1 vs. uniprot
Match: A0A2V3IUG7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG7_9FLOR)

HSP 1 Score: 416 bits (1068), Expect = 2.480e-141
Identity = 210/362 (58.01%), Postives = 282/362 (77.90%), Query Frame = 0
Query:    7 KDMKFEPQLSKGLSVDVPTGSTIYDPAILSLREDFKAKVEERKAKRLQESPDNDVPIQSPMHVSSPSPITKKSRKSMKALILRGNDSSEASESADLELGDLDGETELCCNGYIPLYPSLIIMSIVKILAGIAGVAIGAFELSAGAGGSVGFGSIEKLVISGSFLFAVSFVTVGILLVISGALGTILFTIRLRTNSRTAKRLDVVYHSGLFLLAIILFVLFVLIVWIWSRTSKGGIYSNELWQELVRSNPLHLCTTEERLKCSAFELGQCKEGANQTKMLFCPGHFCVDFCRITTDDVNVQPICAACQEESLLTIDAFVRCKKHETEFANVTACMDVTNADLLVAYRRLLAAALVSFLWIMAS 368
            +++  +P+LS G+SVDVPTGSTIYDPA+LSLREDFKAK EERKAK+ +++P N V + SP+HV+SP P     R+S+K L  + ++  EASE  DLELG+  GE E+CCNGYIPLYP LI+M+++K+LAG+AGV+IG  +L+ G GGS+G  SIEKL+ISGSFLF ++ + +G+LLV+SG LG  LF+IRL+ +  TAK LD++YHSGLFL+AI+  V   L +WIW R SKGG+Y   LW++LVR++PLHLC TE+RL+C+A++L QC E ANQT +LFCPGHFC+DFCRI T+DVNVQP+C +C+E+ L  ID    C+ HE+E+     C ++  AD+L +YRRLLA ALV+FLW+M S
Sbjct:    6 RELGLQPKLSVGISVDVPTGSTIYDPAVLSLREDFKAKYEERKAKQQEQAPTNQVRLSSPLHVTSPLP-----RQSLK-LTGKADEPKEASE--DLELGEDGGEKEMCCNGYIPLYPFLIMMNVLKVLAGLAGVSIGVIQLTTG-GGSIGVSSIEKLIISGSFLFGIAGIVIGMLLVVSGFLGITLFSIRLQNDRFTAKGLDMIYHSGLFLIAILCLVSLGLTIWIWLRASKGGVYDEVLWKDLVRTHPLHLCATEQRLECAAYKLQQCNEVANQTNILFCPGHFCIDFCRIATEDVNVQPVCESCREDPLKNIDILSECRHHESEYTAERGCKEIVEADVLGSYRRLLAVALVTFLWVMVS 358          
BLAST of Gvermi6890.t1 vs. uniprot
Match: A0A7S0ZHV8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHV8_9RHOD)

HSP 1 Score: 69.3 bits (168), Expect = 2.920e-9
Identity = 67/259 (25.87%), Postives = 118/259 (45.56%), Query Frame = 0
Query:   98 ESADLELGDLDGETELCCNGYI----PLYPSLIIMSIVKILAGIAGVAIGAFELSAGAGGSVGFGSIEKLVISGSFLFAVSFVTVGILLVISGALGTILFTIRLRTNSRTA--KRLDVVYHSGLFLLAIILFVLFVLIVWIWSRTSKGGI-----YSNELWQELVRSNPLHLCTTEERLKCSAFELGQCKEGANQTKMLFCPGHFCVDFCRITTDDVNVQPICAACQEESLLTIDAFVRCKKHETEFANVTACMDVTNA 345
            E+ D+     + E   CC  ++    PL  ++I+++ + I+ G   + +G + L  G     GF +IE +V S  ++F++  + +G +++    LG I  +  + T       + +  +Y S + L+ +IL  + +L     S    G I     +S + W + V  +P   C  +    C+ +  G C +  N      CPGH CVDFCR+  D  N    C AC  ++    D F +CK  ET FA      ++ N+
Sbjct:  120 ENPDIPDATYNKEDAGCCKSFMTSVYPLMITIIVLNAIMIIMGGVILGVGVYILEGGEVQLSGFSNIEGVVTSSPYVFSIICIVLGSIIIFFATLG-IAISKFMATGGMFGFIRCMYFIYQSFMILVLLILAAVCIL-----SGVGLGLIRGDNGFSADGWGDNVVLDPRFSCQQQYDFLCAGYLDGNC-DSDNPDINADCPGHRCVDFCRVEEDVPNDTNDCKACINQAENGWD-FPQCKDFETRFAFNGCQQEINNS 370          
The following BLAST results are available for this feature:
BLAST of Gvermi6890.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUG7_9FLOR2.480e-14158.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZHV8_9RHOD2.920e-925.87Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..233
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..197
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 373..394
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 234..353
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..372
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 150..168
NoneNo IPR availableTMHMMTMhelixcoord: 350..372
NoneNo IPR availableTMHMMTMhelixcoord: 210..232
NoneNo IPR availableTMHMMTMhelixcoord: 167..189
NoneNo IPR availableTMHMMTMhelixcoord: 125..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:370588..371897 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1Gvermi6890.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 370588..371897 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=395bp
MNREEEKDMKFEPQLSKGLSVDVPTGSTIYDPAILSLREDFKAKVEERKA
KRLQESPDNDVPIQSPMHVSSPSPITKKSRKSMKALILRGNDSSEASESA
DLELGDLDGETELCCNGYIPLYPSLIIMSIVKILAGIAGVAIGAFELSAG
AGGSVGFGSIEKLVISGSFLFAVSFVTVGILLVISGALGTILFTIRLRTN
SRTAKRLDVVYHSGLFLLAIILFVLFVLIVWIWSRTSKGGIYSNELWQEL
VRSNPLHLCTTEERLKCSAFELGQCKEGANQTKMLFCPGHFCVDFCRITT
DDVNVQPICAACQEESLLTIDAFVRCKKHETEFANVTACMDVTNADLLVA
YRRLLAAALVSFLWIMASSRVFPSKNIFIVRSADVFNIHIIFGD*
back to top