Gvermi6890.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6890.t1
Unique NameGvermi6890.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:370588..371897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6890Gvermi6890Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 370588..371897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1Gvermi6890.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 370588..371897 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1.stop1Gvermi6890.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 370588..370590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1.CDS1Gvermi6890.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 370588..370668 -
Gvermi6890.t1.CDS2Gvermi6890.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 370720..371424 -
Gvermi6890.t1.CDS3Gvermi6890.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 371499..371897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1.exon1Gvermi6890.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 370588..370668 -
Gvermi6890.t1.exon2Gvermi6890.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 370720..371424 -
Gvermi6890.t1.exon3Gvermi6890.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 371499..371897 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1.intron1Gvermi6890.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 370669..370719 -
Gvermi6890.t1.intron2Gvermi6890.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 371425..371498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6890.t1.start1Gvermi6890.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 371895..371897 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=395bp
MNREEEKDMKFEPQLSKGLSVDVPTGSTIYDPAILSLREDFKAKVEERKA
KRLQESPDNDVPIQSPMHVSSPSPITKKSRKSMKALILRGNDSSEASESA
DLELGDLDGETELCCNGYIPLYPSLIIMSIVKILAGIAGVAIGAFELSAG
AGGSVGFGSIEKLVISGSFLFAVSFVTVGILLVISGALGTILFTIRLRTN
SRTAKRLDVVYHSGLFLLAIILFVLFVLIVWIWSRTSKGGIYSNELWQEL
VRSNPLHLCTTEERLKCSAFELGQCKEGANQTKMLFCPGHFCVDFCRITT
DDVNVQPICAACQEESLLTIDAFVRCKKHETEFANVTACMDVTNADLLVA
YRRLLAAALVSFLWIMASSRVFPSKNIFIVRSADVFNIHIIFGD*
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spliced messenger RNA

>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at ScGOVlb_24229:370588..371897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCGAAGAAGAGAAAGACATGAAATTCGAGCCGCAGCTCTCCAA
AGGGCTCAGTGTAGACGTTCCGACAGGCTCAACCATCTATGATCCGGCTA
TTCTCTCGCTTCGAGAAGACTTCAAAGCCAAGGTGGAGGAAAGAAAAGCC
AAGAGGCTTCAAGAATCCCCCGACAATGACGTACCCATCCAAAGCCCCAT
GCATGTCAGTTCTCCATCCCCGATAACAAAGAAGTCAAGAAAGTCGATGA
AAGCGCTTATCCTGAGGGGAAACGACAGCTCGGAAGCCTCGGAATCCGCG
GACCTGGAGCTAGGAGATCTCGACGGGGAAACCGAGTTGTGTTGCAATGG
GTACATACCGCTGTACCCCTCTCTGATAATCATGAGCATTGTGAAGATTC
TGGCTGGAATAGCCGGAGTAGCAATTGGCGCTTTCGAACTGTCGGCGGGT
GCCGGAGGTTCTGTTGGGTTCGGATCGATAGAGAAGTTAGTGATTTCGGG
GTCATTTTTGTTCGCTGTTTCCTTCGTTACGGTCGGAATTTTGCTTGTGA
TATCCGGAGCTCTCGGAACCATTTTGTTCACGATTCGCTTACGGACGAAC
TCTCGCACGGCGAAAAGGCTGGATGTGGTTTATCACAGCGGACTTTTTCT
GTTGGCAATTATTCTTTTTGTTCTGTTCGTGCTTATAGTGTGGATTTGGT
CTCGCACATCAAAAGGAGGCATCTACAGCAATGAGCTTTGGCAAGAACTG
GTTCGAAGCAATCCGTTGCATCTCTGTACGACGGAGGAAAGGCTAAAGTG
CTCAGCATTTGAACTCGGGCAATGCAAAGAAGGGGCGAACCAAACGAAGA
TGCTGTTCTGCCCCGGACACTTTTGCGTTGATTTTTGTCGAATAACGACG
GACGACGTCAACGTGCAACCTATATGTGCAGCATGTCAAGAAGAGTCTTT
GCTCACAATTGACGCATTTGTCAGGTGCAAAAAGCACGAGACTGAATTTG
CAAATGTCACCGCGTGTATGGATGTGACGAATGCCGATCTTCTGGTCGCG
TATCGCCGTCTACTAGCAGCAGCCTTGGTTTCTTTTCTGTGGATTATGGC
TTCTTCACGTGTTTTCCCTTCAAAGAACATTTTCATCGTACGTTCCGCCG
ATGTTTTTAATATTCACATTATCTTTGGCGATTAA
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protein sequence of Gvermi6890.t1

>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=395bp
MNREEEKDMKFEPQLSKGLSVDVPTGSTIYDPAILSLREDFKAKVEERKA
KRLQESPDNDVPIQSPMHVSSPSPITKKSRKSMKALILRGNDSSEASESA
DLELGDLDGETELCCNGYIPLYPSLIIMSIVKILAGIAGVAIGAFELSAG
AGGSVGFGSIEKLVISGSFLFAVSFVTVGILLVISGALGTILFTIRLRTN
SRTAKRLDVVYHSGLFLLAIILFVLFVLIVWIWSRTSKGGIYSNELWQEL
VRSNPLHLCTTEERLKCSAFELGQCKEGANQTKMLFCPGHFCVDFCRITT
DDVNVQPICAACQEESLLTIDAFVRCKKHETEFANVTACMDVTNADLLVA
YRRLLAAALVSFLWIMASSRVFPSKNIFIVRSADVFNIHIIFGD*
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mRNA from alignment at ScGOVlb_24229:370588..371897-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1310bp|location=Sequence derived from alignment at ScGOVlb_24229:370588..371897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCGAAGAAGAGAAAGACATGAAATTCGAGCCGCAGCTCTCCAA
AGGGCTCAGTGTAGACGTTCCGACAGGCTCAACCATCTATGATCCGGCTA
TTCTCTCGCTTCGAGAAGACTTCAAAGCCAAGGTGGAGGAAAGAAAAGCC
AAGAGGCTTCAAGAATCCCCCGACAATGACGTACCCATCCAAAGCCCCAT
GCATGTCAGTTCTCCATCCCCGATAACAAAGAAGTCAAGAAAGTCGATGA
AAGCGCTTATCCTGAGGGGAAACGACAGCTCGGAAGCCTCGGAATCCGCG
GACCTGGAGCTAGGAGATCTCGACGGGGAAACCGAGTTGTGTTGCAATGG
GTACATACCGCTGTACCCCTCTCTGATAATCATGAGCATTGTGAAGATTG
TACGTTTGTTCCTTGTTCCTCACCGCTTCAACAACGACTGACCAGCGTGT
GTTTTATGTTCCGTCGGCATCAGCTGGCTGGAATAGCCGGAGTAGCAATT
GGCGCTTTCGAACTGTCGGCGGGTGCCGGAGGTTCTGTTGGGTTCGGATC
GATAGAGAAGTTAGTGATTTCGGGGTCATTTTTGTTCGCTGTTTCCTTCG
TTACGGTCGGAATTTTGCTTGTGATATCCGGAGCTCTCGGAACCATTTTG
TTCACGATTCGCTTACGGACGAACTCTCGCACGGCGAAAAGGCTGGATGT
GGTTTATCACAGCGGACTTTTTCTGTTGGCAATTATTCTTTTTGTTCTGT
TCGTGCTTATAGTGTGGATTTGGTCTCGCACATCAAAAGGAGGCATCTAC
AGCAATGAGCTTTGGCAAGAACTGGTTCGAAGCAATCCGTTGCATCTCTG
TACGACGGAGGAAAGGCTAAAGTGCTCAGCATTTGAACTCGGGCAATGCA
AAGAAGGGGCGAACCAAACGAAGATGCTGTTCTGCCCCGGACACTTTTGC
GTTGATTTTTGTCGAATAACGACGGACGACGTCAACGTGCAACCTATATG
TGCAGCATGTCAAGAAGAGTCTTTGCTCACAATTGACGCATTTGTCAGGT
GCAAAAAGCACGAGACTGAATTTGCAAATGTCACCGCGTGTATGGATGTG
ACGAATGCCGATCTTCTGGTCGCGTATCGCCGTCTACTAGCAGCAGCCTT
GGTTTCTTTTCTGTGGATTATGGCTTCTGTAAGTGTCTCAACATATCAAC
ATTGTTTTTCTTGAACGATTCGTGTGCAGTCACGTGTTTTCCCTTCAAAG
AACATTTTCATCGTACGTTCCGCCGATGTTTTTAATATTCACATTATCTT
TGGCGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:370588..371897-

>Gvermi6890.t1 ID=Gvermi6890.t1|Name=Gvermi6890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1185bp|location=Sequence derived from alignment at ScGOVlb_24229:370588..371897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCGAAGAAGAGAAAGACATGAAATTCGAGCCGCAGCTCTCCAA
AGGGCTCAGTGTAGACGTTCCGACAGGCTCAACCATCTATGATCCGGCTA
TTCTCTCGCTTCGAGAAGACTTCAAAGCCAAGGTGGAGGAAAGAAAAGCC
AAGAGGCTTCAAGAATCCCCCGACAATGACGTACCCATCCAAAGCCCCAT
GCATGTCAGTTCTCCATCCCCGATAACAAAGAAGTCAAGAAAGTCGATGA
AAGCGCTTATCCTGAGGGGAAACGACAGCTCGGAAGCCTCGGAATCCGCG
GACCTGGAGCTAGGAGATCTCGACGGGGAAACCGAGTTGTGTTGCAATGG
GTACATACCGCTGTACCCCTCTCTGATAATCATGAGCATTGTGAAGATTC
TGGCTGGAATAGCCGGAGTAGCAATTGGCGCTTTCGAACTGTCGGCGGGT
GCCGGAGGTTCTGTTGGGTTCGGATCGATAGAGAAGTTAGTGATTTCGGG
GTCATTTTTGTTCGCTGTTTCCTTCGTTACGGTCGGAATTTTGCTTGTGA
TATCCGGAGCTCTCGGAACCATTTTGTTCACGATTCGCTTACGGACGAAC
TCTCGCACGGCGAAAAGGCTGGATGTGGTTTATCACAGCGGACTTTTTCT
GTTGGCAATTATTCTTTTTGTTCTGTTCGTGCTTATAGTGTGGATTTGGT
CTCGCACATCAAAAGGAGGCATCTACAGCAATGAGCTTTGGCAAGAACTG
GTTCGAAGCAATCCGTTGCATCTCTGTACGACGGAGGAAAGGCTAAAGTG
CTCAGCATTTGAACTCGGGCAATGCAAAGAAGGGGCGAACCAAACGAAGA
TGCTGTTCTGCCCCGGACACTTTTGCGTTGATTTTTGTCGAATAACGACG
GACGACGTCAACGTGCAACCTATATGTGCAGCATGTCAAGAAGAGTCTTT
GCTCACAATTGACGCATTTGTCAGGTGCAAAAAGCACGAGACTGAATTTG
CAAATGTCACCGCGTGTATGGATGTGACGAATGCCGATCTTCTGGTCGCG
TATCGCCGTCTACTAGCAGCAGCCTTGGTTTCTTTTCTGTGGATTATGGC
TTCTTCACGTGTTTTCCCTTCAAAGAACATTTTCATCGTACGTTCCGCCG
ATGTTTTTAATATTCACATTATCTTTGGCGATTAA
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