Gvermi6862.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6862.t1
Unique NameGvermi6862.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Homology
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BLAST of Gvermi6862.t1 vs. uniprot
Match: A0A2V3IUD8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUD8_9FLOR)

HSP 1 Score: 301 bits (771), Expect = 1.820e-99
Identity = 164/279 (58.78%), Postives = 213/279 (76.34%), Query Frame = 0 
Query:    1 MYHISAKPARPRSNRSRNASLQACFLHMRRLRRACRPLTPLVLRALIVLFIAIQLRPIGASANASPVLPACSRVSVFVGVLSAMLSVIFFDMRVFSVALLACVFANFVFEVRQHEHVSLCKLLATLSCHACAILFSSLVGRRRSISKPSALRANLAIKQQYLMNLRCLRHVDVLEVSVRLQACLLTVDFCLAQPNSSSILLLTLPFVILFLLGYCTRRSGSVVVCLLCVFAASEQHSTVLGFSLVSTLSTVAAAVLALCVGPGVLTVDEWLATTQQLYY 279
            MY++ A+PAR RS R RN+   +  LH+RR +R  RPLTP+VLR+LIVLF AIQL+PI    +A+ + P  SR SV  GVLSA LS+IFFD+R+F+  L+A +F NFV +VR+H H+ L  LLA L  H+ A+L S+LVGRRRSISKPSALRANLA K+ Y   LR +R+V +LE++VRLQAC+LT+D  L+Q N+SS + L LPF + FLLGY +RR+G+VV+ +L  FA + QHS  L F L++TL++VAA VL LCVGPG+LT+DEWLATTQQLYY
Sbjct:    1 MYNVCARPARLRSTRPRNSPFHSVILHLRRFKRVVRPLTPIVLRSLIVLFTAIQLQPINTPTHANYI-PVLSRASVLAGVLSAPLSIIFFDIRIFNFTLIAAIFLNFVIDVREHNHLPLPTLLAALIFHSTAVLLSTLVGRRRSISKPSALRANLAHKRHYFATLRTVRYVHILELAVRLQACILTIDHALSQANASSAVFLALPFALFFLLGYNSRRNGAVVLLMLTFFAFTTQHSQFLAFDLLNTLASVAAGVLVLCVGPGLLTIDEWLATTQQLYY 278
The following BLAST results are available for this feature:
BLAST of Gvermi6862.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IUD8_9FLOR1.820e-9958.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 246..250
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 197..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 53..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 251..271
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 216..221
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 140..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 41..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 272..279
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 222..245
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..64
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 198..215
NoneNo IPR availableTMHMMTMhelixcoord: 38..60
NoneNo IPR availableTMHMMTMhelixcoord: 239..261
NoneNo IPR availableTMHMMTMhelixcoord: 117..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:235179..236018 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1Gvermi6862.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 235179..236018 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MYHISAKPARPRSNRSRNASLQACFLHMRRLRRACRPLTPLVLRALIVLF
IAIQLRPIGASANASPVLPACSRVSVFVGVLSAMLSVIFFDMRVFSVALL
ACVFANFVFEVRQHEHVSLCKLLATLSCHACAILFSSLVGRRRSISKPSA
LRANLAIKQQYLMNLRCLRHVDVLEVSVRLQACLLTVDFCLAQPNSSSIL
LLTLPFVILFLLGYCTRRSGSVVVCLLCVFAASEQHSTVLGFSLVSTLST
VAAAVLALCVGPGVLTVDEWLATTQQLYY*
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