Gvermi6862.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6862.t1
Unique NameGvermi6862.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:235179..236018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6862Gvermi6862Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 235179..236018 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1.start1Gvermi6862.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 235179..235181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1.CDS1Gvermi6862.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 235179..236018 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1.exon1Gvermi6862.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 235179..236018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1.stop1Gvermi6862.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 236016..236018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6862.t1Gvermi6862.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 235179..236018 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MYHISAKPARPRSNRSRNASLQACFLHMRRLRRACRPLTPLVLRALIVLF
IAIQLRPIGASANASPVLPACSRVSVFVGVLSAMLSVIFFDMRVFSVALL
ACVFANFVFEVRQHEHVSLCKLLATLSCHACAILFSSLVGRRRSISKPSA
LRANLAIKQQYLMNLRCLRHVDVLEVSVRLQACLLTVDFCLAQPNSSSIL
LLTLPFVILFLLGYCTRRSGSVVVCLLCVFAASEQHSTVLGFSLVSTLST
VAAAVLALCVGPGVLTVDEWLATTQQLYY*
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spliced messenger RNA

>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:235179..236018+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACATCAGCGCTAAACCGGCCCGCCCGCGTTCAAACCGCTCTCG
AAATGCCTCCCTGCAGGCGTGCTTCCTCCACATGCGCCGCTTGAGGCGCG
CGTGCCGCCCGCTCACGCCCCTCGTTCTGCGCGCCCTCATCGTCCTCTTC
ATCGCCATCCAACTGCGCCCGATCGGCGCCTCCGCCAACGCGTCGCCCGT
CCTGCCCGCGTGCTCGCGCGTGTCGGTGTTCGTGGGCGTGCTCTCGGCGA
TGCTGTCGGTCATTTTCTTCGACATGCGCGTCTTCAGCGTCGCGCTGCTG
GCGTGCGTGTTTGCCAACTTTGTGTTCGAGGTGCGCCAGCACGAGCACGT
CTCGCTGTGCAAGCTGCTGGCCACGCTCTCGTGCCACGCCTGCGCCATCC
TGTTCTCGTCGCTCGTCGGCAGACGGCGCTCCATTTCGAAGCCGTCCGCG
CTGCGCGCCAACCTCGCCATCAAGCAGCAGTACCTCATGAACCTGCGCTG
TCTGCGACATGTCGACGTGCTCGAGGTGTCCGTGCGCCTGCAGGCGTGCC
TGCTGACCGTCGACTTTTGTCTCGCGCAGCCCAACTCGTCTTCCATTCTG
CTCCTCACGCTGCCGTTTGTGATTCTGTTCTTGTTGGGCTACTGCACTCG
GCGTAGCGGCTCGGTTGTGGTGTGTCTGCTTTGCGTGTTTGCCGCCTCCG
AACAGCACTCCACCGTGCTGGGCTTCAGCCTGGTGAGCACGCTGAGCACG
GTAGCGGCGGCTGTGCTGGCGCTTTGTGTGGGACCGGGCGTGCTCACCGT
GGACGAATGGCTCGCCACCACGCAGCAACTGTACTACTAA
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protein sequence of Gvermi6862.t1

>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MYHISAKPARPRSNRSRNASLQACFLHMRRLRRACRPLTPLVLRALIVLF
IAIQLRPIGASANASPVLPACSRVSVFVGVLSAMLSVIFFDMRVFSVALL
ACVFANFVFEVRQHEHVSLCKLLATLSCHACAILFSSLVGRRRSISKPSA
LRANLAIKQQYLMNLRCLRHVDVLEVSVRLQACLLTVDFCLAQPNSSSIL
LLTLPFVILFLLGYCTRRSGSVVVCLLCVFAASEQHSTVLGFSLVSTLST
VAAAVLALCVGPGVLTVDEWLATTQQLYY*
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mRNA from alignment at ScGOVlb_24229:235179..236018+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:235179..236018+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCACATCAGCGCTAAACCGGCCCGCCCGCGTTCAAACCGCTCTCG
AAATGCCTCCCTGCAGGCGTGCTTCCTCCACATGCGCCGCTTGAGGCGCG
CGTGCCGCCCGCTCACGCCCCTCGTTCTGCGCGCCCTCATCGTCCTCTTC
ATCGCCATCCAACTGCGCCCGATCGGCGCCTCCGCCAACGCGTCGCCCGT
CCTGCCCGCGTGCTCGCGCGTGTCGGTGTTCGTGGGCGTGCTCTCGGCGA
TGCTGTCGGTCATTTTCTTCGACATGCGCGTCTTCAGCGTCGCGCTGCTG
GCGTGCGTGTTTGCCAACTTTGTGTTCGAGGTGCGCCAGCACGAGCACGT
CTCGCTGTGCAAGCTGCTGGCCACGCTCTCGTGCCACGCCTGCGCCATCC
TGTTCTCGTCGCTCGTCGGCAGACGGCGCTCCATTTCGAAGCCGTCCGCG
CTGCGCGCCAACCTCGCCATCAAGCAGCAGTACCTCATGAACCTGCGCTG
TCTGCGACATGTCGACGTGCTCGAGGTGTCCGTGCGCCTGCAGGCGTGCC
TGCTGACCGTCGACTTTTGTCTCGCGCAGCCCAACTCGTCTTCCATTCTG
CTCCTCACGCTGCCGTTTGTGATTCTGTTCTTGTTGGGCTACTGCACTCG
GCGTAGCGGCTCGGTTGTGGTGTGTCTGCTTTGCGTGTTTGCCGCCTCCG
AACAGCACTCCACCGTGCTGGGCTTCAGCCTGGTGAGCACGCTGAGCACG
GTAGCGGCGGCTGTGCTGGCGCTTTGTGTGGGACCGGGCGTGCTCACCGT
GGACGAATGGCTCGCCACCACGCAGCAACTGTACTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:235179..236018+

>Gvermi6862.t1 ID=Gvermi6862.t1|Name=Gvermi6862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:235179..236018+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCACATCAGCGCTAAACCGGCCCGCCCGCGTTCAAACCGCTCTCG
AAATGCCTCCCTGCAGGCGTGCTTCCTCCACATGCGCCGCTTGAGGCGCG
CGTGCCGCCCGCTCACGCCCCTCGTTCTGCGCGCCCTCATCGTCCTCTTC
ATCGCCATCCAACTGCGCCCGATCGGCGCCTCCGCCAACGCGTCGCCCGT
CCTGCCCGCGTGCTCGCGCGTGTCGGTGTTCGTGGGCGTGCTCTCGGCGA
TGCTGTCGGTCATTTTCTTCGACATGCGCGTCTTCAGCGTCGCGCTGCTG
GCGTGCGTGTTTGCCAACTTTGTGTTCGAGGTGCGCCAGCACGAGCACGT
CTCGCTGTGCAAGCTGCTGGCCACGCTCTCGTGCCACGCCTGCGCCATCC
TGTTCTCGTCGCTCGTCGGCAGACGGCGCTCCATTTCGAAGCCGTCCGCG
CTGCGCGCCAACCTCGCCATCAAGCAGCAGTACCTCATGAACCTGCGCTG
TCTGCGACATGTCGACGTGCTCGAGGTGTCCGTGCGCCTGCAGGCGTGCC
TGCTGACCGTCGACTTTTGTCTCGCGCAGCCCAACTCGTCTTCCATTCTG
CTCCTCACGCTGCCGTTTGTGATTCTGTTCTTGTTGGGCTACTGCACTCG
GCGTAGCGGCTCGGTTGTGGTGTGTCTGCTTTGCGTGTTTGCCGCCTCCG
AACAGCACTCCACCGTGCTGGGCTTCAGCCTGGTGAGCACGCTGAGCACG
GTAGCGGCGGCTGTGCTGGCGCTTTGTGTGGGACCGGGCGTGCTCACCGT
GGACGAATGGCTCGCCACCACGCAGCAACTGTACTACTAA
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