Gvermi6843.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6843.t1
Unique NameGvermi6843.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Homology
BLAST of Gvermi6843.t1 vs. uniprot
Match: A9TVD2_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9TVD2_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 8.090e-23
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNTP-------PIPARPSITKPQANISKLNVASLRRYRSVYKL-DVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISR 244
            VLP  T+V +TGNNRTK  L+G HG V  A  LGGWH + LT+G  V++QRNAL V+  P+ +         P  +  S+     ++SKL VA+L+RYR  +KL +V  + +K++L+ AV +HF   +++E++VI++F++   R
Sbjct:   26 VLPRHTKVLVTGNNRTKSVLVGLHGVVTKAVGLGGWHWLVLTNGDEVKLQRNALSVIEAPSGHEEHDENEDNPFSSGTSLVL-SVDLSKLEVAALKRYRRHFKLVEVGPNSTKEQLLHAVGRHFMSQELDETQVISAFMQAAKR 168          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A1X6NV33_PORUM (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV33_PORUM)

HSP 1 Score: 106 bits (264), Expect = 8.620e-23
Identity = 85/244 (34.84%), Postives = 104/244 (42.62%), Query Frame = 0
Query:  107 DPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSL-TDGGIVRVQRNALHVLNLPNRNTPPIPARP------------------------------SITKPQ----------------------------------------------------------------------ANISKLNVASLRRYRSVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASP 249
            D VLPPG+ VRI+GNNRTK  LIG+ G V+S+QTLGGWHEVSL   GG+VRVQRNAL VL L     P +P  P                              S T P                                                                       AN   L   SL RYR+VY L+VA DCS+DELV AV++HF  + V+E +VI+ FLR++ R  +SP
Sbjct:  210 DAVLPPGSLVRISGNNRTKLQLIGKVGRVVSSQTLGGWHEVSLEAGGGVVRVQRNALEVLAL----APAVPGVPVHGHPTSTGRSGGXXXXXXXXXXXXXXXXXSATAPDNGSARHGHGSAPSRGNASGLVSSPADGGGSTSRAGDXKXXXXXXXXXXXXXXXXXXRLRVGGAGPGAGTVANFDALQFDSLNRYRTVYGLNVAVDCSRDELVRAVRRHFASSSVDELQVISDFLRRV-RHCSSP 448          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A5B8MMH3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMH3_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 1.020e-20
Identity = 66/171 (38.60%), Postives = 87/171 (50.88%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPN-------------------RNTPPIPARPSITKPQ---------------------ANISKLNVASLRRYRSVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFL 239
            +LP  T+V +TGNNRTK  L+G  GTV  A  LGGWH + L+DG  VR+QRNAL VL  P                    R T  + A    TK +                      N +KL VA+L+RY+  YKL V  + +K++LV AV  HF K KV+E +V+ +FL
Sbjct:   22 LLPRHTKVLVTGNNRTKSKLVGLKGTVKKAVGLGGWHWLVLSDGSHVRLQRNALTVLEQPTGEESESEEDENEARTGGEERTTFSVTAVGGRTKRKPSRYATTSSLRRQDDQSPDVSVNFNKLEVAALKRYKKHYKLKVQANATKEQLVSAVGAHFVKQKVDERKVVHTFL 192          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A443PFA0_9MAGN (Histone deacetylase complex subunit SAP30 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PFA0_9MAGN)

HSP 1 Score: 94.7 bits (234), Expect = 2.560e-20
Identity = 64/163 (39.26%), Postives = 86/163 (52.76%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPN-------------------RNTPPIPARPSITKPQANISKLNVASLRRYRSVYKLDVAK-DCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPTG 251
            VLP  T+V +TGNNRTK  L+G  G V  A  LGGWH + LT+G  V++QRNAL V+ +PN                   RNTP         +   N+ KL  A+LRRY   +KLD      SK++LV AV++HF   +++E +VI  F+    R   S  G
Sbjct:   27 VLPRRTKVLVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGTEVKIQRNALSVIEVPNGDEDDDWEDLSSGGSDLGSRNTPQ-------RRLTVNLRKLETAALRRYWRHFKLDELNFHPSKEQLVEAVERHFISQQLDEFQVIAGFVHAAKRLKQSVRG 182          
BLAST of Gvermi6843.t1 vs. uniprot
Match: I0YTI0_COCSC (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YTI0_COCSC)

HSP 1 Score: 90.5 bits (223), Expect = 1.660e-18
Identity = 67/180 (37.22%), Postives = 85/180 (47.22%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNT-------------------------PPIPARPSI-------------TKPQANISKLNVASLRRYRSVYKL-DVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASP 249
            +L  GT V I+GN RTK  L+G  G V  A  LGGWH + L+ G  VR+QRNAL VL  P  +                          PP P  PS              ++P+ N   L  A+L+RYR  YKL DV  + SKD+LV AV +HF    V+ES+VI  F+    R    P
Sbjct:   24 LLHRGTSVLISGNQRTKQALVGLKGRVRKAVGLGGWHWLRLSSGEEVRLQRNALTVLEPPTGHQESDFSEEEENAANQAEALPRMRARRPPRPLAPSPELPHQRRISVRHGSQPRINFHNLETAALKRYRRFYKLPDVGPNSSKDQLVMAVGRHFMAQTVDESKVIALFVAAARRAALEP 203          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A7I8L194_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L194_SPIIN)

HSP 1 Score: 89.7 bits (221), Expect = 2.270e-18
Identity = 63/156 (40.38%), Postives = 86/156 (55.13%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNR----NTPPIPARPS----ITKPQ----ANISKLNVASLRRYRSVYKLDVAK-DCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPTG 251
            VLPP T+V +TGNNRT+  L+G  G V  +  LGGWH + LT+G  V++QRNAL V+  P R    +   + +  S     T+PQ     +I KL   SL RY   +KLD      SK +L+ AV++HF    ++ES+VI  FL    R   S  G
Sbjct:   32 VLPPHTKVVVTGNNRTRSVLVGLQGVVKKSVGLGGWHWLVLTNGVEVKLQRNALSVIEAPTREQEDHCKSLLSGSSHLQFTTRPQQKLTVDIGKLGAVSLWRYWRHFKLDGKNVPSSKAQLIEAVERHFISQNLDESQVIADFLHAAKRLRQSVHG 187          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A1D1Z862_9ARAE (Histone deacetylase complex subunit SAP30L n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z862_9ARAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.610e-17
Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNTP------PIPARP---SITKPQA----NISKLNVASLRRYRSVYKLDVA--KDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPTG 251
            VLPP T+V +TGNNRT+  L+G  G V  +  LGGWH + LT+G  V++QRNAL V+  P R         P+       S  +PQ     +I KL   SL RY   YKL+    +  SK++L+  V++HF   +++E +VI  FL    R   S  G
Sbjct:   28 VLPPQTKVVVTGNNRTRSVLVGLQGVVKKSVGLGGWHWLVLTNGVEVKLQRNALSVIEAPVREEQHECVQGPLSGASHFGSAKQPQGKLTVDIRKLGAVSLWRYWRHYKLEGKNFRPSSKEQLIEVVQRHFVSQQLDEFQVIAGFLHAAKRLRESVHG 185          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A4D8ZAU6_SALSN (SAP30_Sin3_bdg domain-containing protein n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZAU6_SALSN)

HSP 1 Score: 88.2 bits (217), Expect = 1.960e-17
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 0
Query:  108 PVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNTPP---------IPARPSITKPQANISKLNVASLRRYRSVYKL-DVAKDCSKDELVGAVKKHFEKAKVN---ESEVITSFLRQISR 244
            P LP  T+V ITGN+RT+ DL+G  G V  A  +GGWH + L++G  V++QRNAL V   P  N                 S  K   +++KL+  SLRRY   Y L D+A + +K++L+ A ++HF   KV+   E +VIT F     R
Sbjct:   68 PGLPRHTKVTITGNSRTRKDLVGMEGVVTKAGGIGGWHWLLLSNGEKVKLQRNALTVSEPPTGNEEDDDIDDSASGSDTNHSTCKEGVDLAKLSSESLRRYCEKYHLVDIASNPTKEQLIKAAQEHFSSQKVDGDEEEQVITEFSNAAKR 217          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A0K9PBC4_ZOSMR (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PBC4_ZOSMR)

HSP 1 Score: 85.5 bits (210), Expect = 5.020e-17
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNTPPIPAR-------PSITKPQANISKLNVASLRRYRSVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRR 245
            VLP  T+V +TGNNRTK   +G    V  A  LGGW+ + LT+G  VR+QRNAL V+  P  +      R       P    P  ++ KL++ SLR+Y   +KL   +  S+++L+  V+KHF   +++E +VI  FL+   RR
Sbjct:   16 VLPAHTKVLVTGNNRTKPVHVGLQAVVKKAVGLGGWYWLVLTNGDEVRLQRNALSVIEAPIEHNEEEYYREEKTVCCPKRQPPIVDLRKLDMVSLRKYCRHFKL--LQQPSREQLIEIVEKHFSSQQLDEFQVIAGFLQASKRR 157          
BLAST of Gvermi6843.t1 vs. uniprot
Match: A0A022Q684_ERYGU (SAP30_Sin3_bdg domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q684_ERYGU)

HSP 1 Score: 85.9 bits (211), Expect = 9.580e-17
Identity = 61/177 (34.46%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  109 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLNLPNRNTPPIP-------------------------------ARPSI--------TKPQANISKLNVASLRRY-RSVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRR 245
            VLP  T+V +TGNNRTK  L+G  G V  A  LGGWH + L +G  V++QRNAL VL  P  N                                    ++P +        T+ + N+ KL   SL RY RS +  +++ + +K++LV AV+KHF   KV+E +VI  F+R   +R
Sbjct:   26 VLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEPPTGNEDXXXXXXXXXDSSSGSDICDKHHRRFSYGFHFSKISKPRVRYNRPCNATQLRVNLGKLGTGSLCRYWRSFHLANISPNPTKEQLVNAVQKHFSSQKVDEVQVILEFIRAAKKR 202          
The following BLAST results are available for this feature:
BLAST of Gvermi6843.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9TVD2_PHYPA8.090e-2340.97Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A1X6NV33_PORUM8.620e-2334.84SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
A0A5B8MMH3_9CHLO1.020e-2038.60Hypothetical protein n=1 Tax=Chloropicon primus Ta... [more]
A0A443PFA0_9MAGN2.560e-2039.26Histone deacetylase complex subunit SAP30 n=1 Tax=... [more]
I0YTI0_COCSC1.660e-1837.22SAP30_Sin3_bdg domain-containing protein n=1 Tax=C... [more]
A0A7I8L194_SPIIN2.270e-1840.38Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A1D1Z862_9ARAE1.610e-1738.61Histone deacetylase complex subunit SAP30L n=1 Tax... [more]
A0A4D8ZAU6_SALSN1.960e-1738.67SAP30_Sin3_bdg domain-containing protein n=3 Tax=S... [more]
A0A0K9PBC4_ZOSMR5.020e-1738.19SAP30_Sin3_bdg domain-containing protein n=1 Tax=Z... [more]
A0A022Q684_ERYGU9.580e-1734.46SAP30_Sin3_bdg domain-containing protein n=2 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 47..68
score: 46.36
coord: 68..84
score: 38.82
coord: 85..102
score: 32.22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..93
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 109..242
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 176..250
e-value: 2.5E-19
score: 70.9
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 191..241
e-value: 1.8E-17
score: 63.3
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 109..242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:81788..82549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1Gvermi6843.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 81788..82549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MTSSHNRNTTPASPARHRKPMRHPQLPQYQSYPQRHHPPLPSHHSAPHPR
PSSPPATPPLPPPSPTHPNPSPPSPATPTTPPPPRVTPPSGRPRPRPSHH
RSNPHTDPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLT
DGGIVRVQRNALHVLNLPNRNTPPIPARPSITKPQANISKLNVASLRRYR
SVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPT
GAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038291SAP30_C_sf
IPR025718SAP30_Sin3-bd
IPR024145His_deAcase_SAP30/SAP30L