Gvermi6843.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6843.t1
Unique NameGvermi6843.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:81788..82549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705689.1
PFAMsSAP30_Sin3_bdg
Max annot lvl2759|Eukaryota
KEGG koko:K19202
Evalue5.69e-24
EggNOG OGs2CMXQ@1|root,2QSKD@2759|Eukaryota
DescriptionSin3 binding region of histone deacetylase complex subunit SAP30
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6843Gvermi6843Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 81788..82549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1.stop1Gvermi6843.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 81788..81790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1.CDS1Gvermi6843.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 81788..82549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1.exon1Gvermi6843.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 81788..82549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1.start1Gvermi6843.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 82547..82549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6843.t1Gvermi6843.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 81788..82549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
MTSSHNRNTTPASPARHRKPMRHPQLPQYQSYPQRHHPPLPSHHSAPHPR
PSSPPATPPLPPPSPTHPNPSPPSPATPTTPPPPRVTPPSGRPRPRPSHH
RSNPHTDPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLT
DGGIVRVQRNALHVLNLPNRNTPPIPARPSITKPQANISKLNVASLRRYR
SVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPT
GAE*
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spliced messenger RNA

>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:81788..82549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCCTCACACAACCGCAACACAACTCCTGCCTCCCCCGCCCGCCA
CCGAAAACCAATGCGGCACCCTCAACTACCTCAATACCAGTCGTACCCCC
AACGACACCATCCACCACTTCCCTCCCATCACAGCGCTCCCCATCCCCGC
CCGTCCTCTCCCCCCGCCACACCCCCCCTTCCTCCCCCCTCGCCCACGCA
TCCCAATCCATCCCCGCCCTCGCCCGCCACCCCCACCACACCGCCCCCGC
CGCGCGTCACCCCGCCCTCCGGCCGCCCGCGCCCCAGACCATCGCACCAC
CGTTCCAATCCGCACACAGACCCTGTTCTCCCTCCCGGCACACGCGTTCG
CATCACCGGCAACAACCGTACCAAATGGGATTTAATTGGTCGTCACGGCA
CCGTTCTTTCCGCTCAAACCCTCGGCGGTTGGCACGAAGTTTCCCTCACA
GATGGCGGCATCGTTCGCGTGCAACGGAATGCATTGCACGTTCTCAATTT
ACCCAACCGAAACACTCCTCCTATCCCTGCGCGCCCGTCTATTACAAAGC
CACAGGCAAACATTTCAAAGCTCAATGTCGCCAGCCTGCGTCGCTATCGC
TCTGTATACAAATTGGATGTAGCGAAAGACTGTTCCAAGGATGAGCTTGT
GGGTGCCGTGAAGAAACACTTTGAGAAAGCCAAGGTCAACGAATCGGAGG
TTATTACGAGCTTCTTGCGTCAAATTTCCAGACGAGGTGCCTCCCCCACA
GGCGCAGAATAG
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protein sequence of Gvermi6843.t1

>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MTSSHNRNTTPASPARHRKPMRHPQLPQYQSYPQRHHPPLPSHHSAPHPR
PSSPPATPPLPPPSPTHPNPSPPSPATPTTPPPPRVTPPSGRPRPRPSHH
RSNPHTDPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLT
DGGIVRVQRNALHVLNLPNRNTPPIPARPSITKPQANISKLNVASLRRYR
SVYKLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQISRRGASPT
GAE*
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mRNA from alignment at ScGOVlb_24229:81788..82549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:81788..82549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCCTCACACAACCGCAACACAACTCCTGCCTCCCCCGCCCGCCA
CCGAAAACCAATGCGGCACCCTCAACTACCTCAATACCAGTCGTACCCCC
AACGACACCATCCACCACTTCCCTCCCATCACAGCGCTCCCCATCCCCGC
CCGTCCTCTCCCCCCGCCACACCCCCCCTTCCTCCCCCCTCGCCCACGCA
TCCCAATCCATCCCCGCCCTCGCCCGCCACCCCCACCACACCGCCCCCGC
CGCGCGTCACCCCGCCCTCCGGCCGCCCGCGCCCCAGACCATCGCACCAC
CGTTCCAATCCGCACACAGACCCTGTTCTCCCTCCCGGCACACGCGTTCG
CATCACCGGCAACAACCGTACCAAATGGGATTTAATTGGTCGTCACGGCA
CCGTTCTTTCCGCTCAAACCCTCGGCGGTTGGCACGAAGTTTCCCTCACA
GATGGCGGCATCGTTCGCGTGCAACGGAATGCATTGCACGTTCTCAATTT
ACCCAACCGAAACACTCCTCCTATCCCTGCGCGCCCGTCTATTACAAAGC
CACAGGCAAACATTTCAAAGCTCAATGTCGCCAGCCTGCGTCGCTATCGC
TCTGTATACAAATTGGATGTAGCGAAAGACTGTTCCAAGGATGAGCTTGT
GGGTGCCGTGAAGAAACACTTTGAGAAAGCCAAGGTCAACGAATCGGAGG
TTATTACGAGCTTCTTGCGTCAAATTTCCAGACGAGGTGCCTCCCCCACA
GGCGCAGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:81788..82549-

>Gvermi6843.t1 ID=Gvermi6843.t1|Name=Gvermi6843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:81788..82549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCCTCACACAACCGCAACACAACTCCTGCCTCCCCCGCCCGCCA
CCGAAAACCAATGCGGCACCCTCAACTACCTCAATACCAGTCGTACCCCC
AACGACACCATCCACCACTTCCCTCCCATCACAGCGCTCCCCATCCCCGC
CCGTCCTCTCCCCCCGCCACACCCCCCCTTCCTCCCCCCTCGCCCACGCA
TCCCAATCCATCCCCGCCCTCGCCCGCCACCCCCACCACACCGCCCCCGC
CGCGCGTCACCCCGCCCTCCGGCCGCCCGCGCCCCAGACCATCGCACCAC
CGTTCCAATCCGCACACAGACCCTGTTCTCCCTCCCGGCACACGCGTTCG
CATCACCGGCAACAACCGTACCAAATGGGATTTAATTGGTCGTCACGGCA
CCGTTCTTTCCGCTCAAACCCTCGGCGGTTGGCACGAAGTTTCCCTCACA
GATGGCGGCATCGTTCGCGTGCAACGGAATGCATTGCACGTTCTCAATTT
ACCCAACCGAAACACTCCTCCTATCCCTGCGCGCCCGTCTATTACAAAGC
CACAGGCAAACATTTCAAAGCTCAATGTCGCCAGCCTGCGTCGCTATCGC
TCTGTATACAAATTGGATGTAGCGAAAGACTGTTCCAAGGATGAGCTTGT
GGGTGCCGTGAAGAAACACTTTGAGAAAGCCAAGGTCAACGAATCGGAGG
TTATTACGAGCTTCTTGCGTCAAATTTCCAGACGAGGTGCCTCCCCCACA
GGCGCAGAATAG
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