Gvermi6820.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6820.t1
Unique NameGvermi6820.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Homology
BLAST of Gvermi6820.t1 vs. uniprot
Match: A0A2V3J3L9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3L9_9FLOR)

HSP 1 Score: 455 bits (1170), Expect = 5.370e-156
Identity = 248/410 (60.49%), Postives = 313/410 (76.34%), Query Frame = 0
Query:    4 SSSHILGSSLSGSVELLTLCFAGAYLVHSAILDRKLTRRLSKACKDMFIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAVFAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLMEVPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEAPLVAE-------NCCTPEDEADG-LKESISRALKSPIFMSMIAAVFLAFISPVANALLNHDGALRPVMLSINILGNVVVPVNAIVVGAEFYLSMV--EDDNREYDYQEDEMFGNRVFAVILIWRLIVLPALARFIYSSLGLASQVHNHLLGIFGLIEFNNPTANTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAALQLQYS 403
            SSS IL SSLSGSVELLTLC AGA LVH+ + D  +T +LS+A K++FIP LVFGSILHTA SAI TL++  DS  ALQ+IWVPV LAF+V G++A+FA PIT+L+A  KQ+AV+RA+F CL LGNANV+PLLVMQSLCDTFPPLM  PHCY++SMGYASLFLT+INIISWT LYQ+LR S+D+  D    EEAPL+++       N     DE    + ++I R L S IF++++AA+ +A + P+ NA L+ DG LRP +LSINILGNVVVPVN+++VGAE Y S+    D++R   Y+++E FG+  F VIL WRL+  P +AR +Y  LGL S++ + LLGIFGL+EFNNPTANTTVM++S+V  RL R G QL  DV +TVF QFL TPIFLT+NTAAAL LQY+
Sbjct:    3 SSSRILQSSLSGSVELLTLCAAGALLVHTQVFDADVTTQLSRAMKNLFIPALVFGSILHTAHSAIETLITSRDSI-ALQQIWVPVALAFLVFGMAAIFAYPITKLIASGKQQAVQRAVFACLVLGNANVMPLLVMQSLCDTFPPLMRTPHCYDKSMGYASLFLTVINIISWTVLYQFLRDSKDS--DHFREEEAPLLSQTGFRSSINHPMDLDEPRAPIIDAIKRVLCSHIFLAVVAALAIAIVYPLGNAFLDDDGVLRPFLLSINILGNVVVPVNSLIVGAELYNSLYGCRDEDRYIKYKDEE-FGSSTFLVILFWRLVAFPWIARILYVLLGLDSKLGDPLLGIFGLVEFNNPTANTTVMLISVVSTRLPRIGDQLRYDVAKTVFWQFLATPIFLTLNTAAALHLQYA 408          
BLAST of Gvermi6820.t1 vs. uniprot
Match: A0A2V3ISQ9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ9_9FLOR)

HSP 1 Score: 384 bits (986), Expect = 5.130e-128
Identity = 213/413 (51.57%), Postives = 280/413 (67.80%), Query Frame = 0
Query:    3 SSSSHILGSSLSGSVELLTLCFAGAYLVHSAILDRKLTRRLSKACKDMFIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAVFAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLMEVPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEA---PLVAENCCTPEDEAD-------GLKESISRALKSPIFMSMIAAVFLAFISPVANALLNHDGALRPVMLSINILGNVVVPVNAIVVGAEFYLSMVE--DDNREYDYQEDEMFGNRVFAVILIWRLIVLPALARFIYSSLGLASQVHNHLLGIFGLIEFNNPTANTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAALQLQYS 403
            S+++ ILGSS+ GSVELLTL   GA LVH  +  + +T  LS+A   +FIP LVFGSIL T  SA+ ++   N   SALQEIWVPV LA ++  I+A+ A P+TRL+A  KQEAV+RAIF CL LGNAN +PLLVMQSLCDTF PL +   CY +SMGYASLFLT++NI+SWT L+QYL  + D+ +     E A   P  A     P D  D        +KE+I RAL SP F+++++++  A I  + +A L+  G LRP +LSINI+G +VVPV+ ++VG+E Y S+    +D      +  E FG + F VIL  R+++LP +AR IY +   + +VHNHLLGIFGL+EFN PTAN TV+M+S+    L R GRQL +DV + VF QFL TPIFLT+NTAAAL LQ+S
Sbjct:    2 STAAQILGSSIGGSVELLTLSSVGALLVHIGVFQQAVTSALSRAVYLIFIPALVFGSILETTHSALKSVRETNGDPSALQEIWVPVVLALIIYVITAIIAFPVTRLIARSKQEAVKRAIFACLILGNANTMPLLVMQSLCDTFLPLQQGGQCYPKSMGYASLFLTVVNIVSWTALFQYLMYAPDSSLAASDEEHALLQPRPAPQHIRPLDHEDVDVSRPDPVKEAIMRALVSPPFIAVVSSMTCAIIPGLGDAFLHEQGLLRPFLLSINIVGGIVVPVSCMIVGSELYRSLASSSEDEELVKRRPQEQFGTQTFVVILFVRMVLLPLVAREIYRAFNFSERVHNHLLGIFGLVEFNVPTANNTVIMISIAAESLPRIGRQLRQDVSKAVFWQFLATPIFLTLNTAAALNLQFS 414          
BLAST of Gvermi6820.t1 vs. uniprot
Match: R7QA56_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA56_CHOCR)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  138 MQSLCDTFPPLMEVPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEAPLVAENCCTPEDEADGLK--ESISRALKSPIFMSMIAAVFLA 237
            MQSLCD+F PL   P C  RS G+ASL++T++ + +WT +++YL A+ D        E  P+V  +  TP     G+   E+I +A+ SP  +S+I  + LA
Sbjct:    1 MQSLCDSFAPLNHDPKCVVRSTGFASLYITVVTLFTWTIIFEYLSAAPDATGSNDM-ESHPIVGTS--TPRASRTGMSLGENIRKAMGSPPSLSVILGIGLA 99          
BLAST of Gvermi6820.t1 vs. uniprot
Match: A0A1X6NVP0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVP0_PORUM)

HSP 1 Score: 69.7 bits (169), Expect = 1.630e-9
Identity = 85/371 (22.91%), Postives = 149/371 (40.16%), Query Frame = 0
Query:   43 LSKACKDMFIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAVFAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLMEVPHCYERSMGYASLFLTIINIISWTTLYQYLR-ASRDNVVDRP---------AAEEAPLVAENCCTPEDEADGLKESISRALKSPIFMSMIAAVFLAFISPVANALLNHDGALRPVMLSINILGNVVVPVNAIVVGAEFYLSMVEDDNREYDYQEDEMFGNRVFAVILIWRLIVLPA---LARFIYSSLGLA--SQVHNHLLGIFGLIEFNNPTANTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAAL 398
            +S+    +F+PCL+F SI+ T  +A  + ++           W  V L    +  +AV      R ++       RRA  V    GN+  LP+L+  S+CD + PL+    C  R+ GY SL+L + +   WT   +YL  A+ D                      +   C            S   +L +P F++++AA+  + I      L+     L  + L++ +LG                                 +    V AV+ + R++++P    L   +  ++GL   S+V   +L +  ++ F  PTAN  ++M  +       AG +    V   +F Q+L  P+F++  TA AL
Sbjct:    1 MSRMIVSLFLPCLLFISIVETLYAAAQSPVTSTTPVLLAMPAWAIVIL----IECAAVGTWVSRRWLSPTLSRPDRRACVVACVFGNSGQLPILLAGSVCDNYGPLVGDAGCKARATGYCSLYLLVWSSTLWTLGNRYLAGAAGDGXXXXXXXXXXXGPWGPPRGRWLLGACLAALPALPAAVRSTLGSLLTPPFLAIVAALCFSTIPGAGALLVGRSSVLHSLALTMELLGG-------------------------------RLDARSVLAVV-VARMLIMPVVGTLTLHLVLAVGLMDRSKVDPLMLTVMAMMAFV-PTANNALIMAQVAG-----AGDE---AVALVIFWQYLVAPVFVSGWTALAL 326          
The following BLAST results are available for this feature:
BLAST of Gvermi6820.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J3L9_9FLOR5.370e-15660.49Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3ISQ9_9FLOR5.130e-12851.57Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
R7QA56_CHOCR1.700e-1138.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NVP0_PORUM1.630e-922.91Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 218..332
e-value: 1.9E-6
score: 26.5
coord: 17..186
e-value: 1.3E-13
score: 50.2
NoneNo IPR availablePANTHERPTHR31651:SF31AUXIN EFFLUX CARRIERcoord: 13..396
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 401..406
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 282..301
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..247
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 360..378
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 142..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 248..258
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..281
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 302..323
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 182..225
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 379..400
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 335..359
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 324..334
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..83
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 338..360
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 159..181
NoneNo IPR availableTMHMMTMhelixcoord: 380..402
NoneNo IPR availableTMHMMTMhelixcoord: 225..247
NoneNo IPR availableTMHMMTMhelixcoord: 304..323
NoneNo IPR availableTMHMMTMhelixcoord: 262..284
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR045033Protein PIN-LIKES 1/3/4/5/7PANTHERPTHR31651FAMILY NOT NAMEDcoord: 13..396

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2422451..2423891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1Gvermi6820.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2422451..2423891 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MTSSSSHILGSSLSGSVELLTLCFAGAYLVHSAILDRKLTRRLSKACKDM
FIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAV
FAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLME
VPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEAPLV
AENCCTPEDEADGLKESISRALKSPIFMSMIAAVFLAFISPVANALLNHD
GALRPVMLSINILGNVVVPVNAIVVGAEFYLSMVEDDNREYDYQEDEMFG
NRVFAVILIWRLIVLPALARFIYSSLGLASQVHNHLLGIFGLIEFNNPTA
NTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAALQL
QYSGRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_trans
IPR045033PILS1/3/4/5/7