Gvermi6820.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6820.t1
Unique NameGvermi6820.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2422451..2423891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705880.1
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue2.8e-20
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6820Gvermi6820Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2422451..2423891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1Gvermi6820.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2422451..2423891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1.stop1Gvermi6820.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2422451..2422453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1.CDS1Gvermi6820.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2422451..2422816 -
Gvermi6820.t1.CDS2Gvermi6820.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2422896..2423036 -
Gvermi6820.t1.CDS3Gvermi6820.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2423101..2423295 -
Gvermi6820.t1.CDS4Gvermi6820.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2423373..2423891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1.exon1Gvermi6820.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2422451..2422816 -
Gvermi6820.t1.exon2Gvermi6820.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2422896..2423036 -
Gvermi6820.t1.exon3Gvermi6820.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2423101..2423295 -
Gvermi6820.t1.exon4Gvermi6820.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2423373..2423891 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1.intron1Gvermi6820.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2422817..2422895 -
Gvermi6820.t1.intron2Gvermi6820.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2423037..2423100 -
Gvermi6820.t1.intron3Gvermi6820.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2423296..2423372 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6820.t1.start1Gvermi6820.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2423889..2423891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MTSSSSHILGSSLSGSVELLTLCFAGAYLVHSAILDRKLTRRLSKACKDM
FIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAV
FAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLME
VPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEAPLV
AENCCTPEDEADGLKESISRALKSPIFMSMIAAVFLAFISPVANALLNHD
GALRPVMLSINILGNVVVPVNAIVVGAEFYLSMVEDDNREYDYQEDEMFG
NRVFAVILIWRLIVLPALARFIYSSLGLASQVHNHLLGIFGLIEFNNPTA
NTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAALQL
QYSGRS*
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spliced messenger RNA

>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_88:2422451..2423891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCATCTTCTTCGCATATTCTCGGATCTAGCCTGAGCGGCAGCGT
AGAGCTGCTAACGCTTTGTTTCGCAGGCGCATACCTTGTGCATTCTGCAA
TTCTCGATCGTAAGCTGACGAGAAGGCTATCCAAAGCATGCAAAGACATG
TTCATCCCATGCCTTGTATTCGGTTCCATTCTGCACACAGCACGCTCCGC
TATTCACACACTGCTGTCCAAAAATGACTCATTCTCGGCACTGCAAGAAA
TATGGGTTCCCGTGTTTCTCGCTTTTATGGTGTTGGGAATCAGCGCAGTA
TTTGCTATTCCTATTACCAGACTTGTTGCCTTTGACAAGCAGGAGGCTGT
ACGGCGAGCAATTTTCGTATGCCTCGCGCTTGGGAATGCCAACGTTCTTC
CGTTGTTGGTCATGCAATCCCTTTGCGACACGTTCCCCCCCCTGATGGAG
GTACCGCATTGTTACGAGAGGAGCATGGGGTACGCTTCTTTGTTCCTTAC
AATCATCAATATCATATCGTGGACAACGCTGTACCAATACTTGCGAGCTT
CTCGTGACAACGTTGTGGACAGACCTGCCGCAGAGGAAGCTCCTCTTGTG
GCGGAAAACTGCTGCACTCCTGAAGACGAGGCAGACGGACTTAAAGAATC
TATCTCACGTGCATTGAAATCTCCAATCTTCATGTCCATGATTGCAGCCG
TGTTTCTCGCATTTATAAGTCCAGTTGCGAATGCGTTGCTTAACCATGAC
GGGGCACTGAGACCAGTTATGCTCTCCATTAATATTCTTGGCAATGTAGT
TGTGCCAGTGAATGCCATTGTTGTGGGAGCCGAATTCTACTTATCAATGG
TAGAGGATGATAATCGAGAATACGATTATCAGGAGGACGAAATGTTTGGG
AATCGCGTGTTCGCAGTTATCCTTATATGGCGGTTGATTGTTCTGCCCGC
GCTGGCGCGTTTCATATACTCTTCTCTAGGTTTGGCGTCACAAGTGCACA
ATCATCTTCTCGGTATATTTGGTTTGATCGAGTTTAACAATCCTACCGCG
AACACAACGGTCATGATGATGTCTTTAGTCAGAAACAGGCTAAAGCGAGC
TGGCAGACAGCTTGGCCGTGATGTTGTGCGGACAGTGTTCATCCAGTTCT
TGTGCACTCCAATCTTCTTGACTATCAACACTGCCGCTGCTCTTCAATTG
CAATATTCTGGCAGGTCATGA
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protein sequence of Gvermi6820.t1

>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MTSSSSHILGSSLSGSVELLTLCFAGAYLVHSAILDRKLTRRLSKACKDM
FIPCLVFGSILHTARSAIHTLLSKNDSFSALQEIWVPVFLAFMVLGISAV
FAIPITRLVAFDKQEAVRRAIFVCLALGNANVLPLLVMQSLCDTFPPLME
VPHCYERSMGYASLFLTIINIISWTTLYQYLRASRDNVVDRPAAEEAPLV
AENCCTPEDEADGLKESISRALKSPIFMSMIAAVFLAFISPVANALLNHD
GALRPVMLSINILGNVVVPVNAIVVGAEFYLSMVEDDNREYDYQEDEMFG
NRVFAVILIWRLIVLPALARFIYSSLGLASQVHNHLLGIFGLIEFNNPTA
NTTVMMMSLVRNRLKRAGRQLGRDVVRTVFIQFLCTPIFLTINTAAALQL
QYSGRS*
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mRNA from alignment at ScGOVlb_88:2422451..2423891-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1441bp|location=Sequence derived from alignment at ScGOVlb_88:2422451..2423891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCATCTTCTTCGCATATTCTCGGATCTAGCCTGAGCGGCAGCGT
AGAGCTGCTAACGCTTTGTTTCGCAGGCGCATACCTTGTGCATTCTGCAA
TTCTCGATCGTAAGCTGACGAGAAGGCTATCCAAAGCATGCAAAGACATG
TTCATCCCATGCCTTGTATTCGGTTCCATTCTGCACACAGCACGCTCCGC
TATTCACACACTGCTGTCCAAAAATGACTCATTCTCGGCACTGCAAGAAA
TATGGGTTCCCGTGTTTCTCGCTTTTATGGTGTTGGGAATCAGCGCAGTA
TTTGCTATTCCTATTACCAGACTTGTTGCCTTTGACAAGCAGGAGGCTGT
ACGGCGAGCAATTTTCGTATGCCTCGCGCTTGGGAATGCCAACGTTCTTC
CGTTGTTGGTCATGCAATCCCTTTGCGACACGTTCCCCCCCCTGATGGAG
GTACCGCATTGTTACGAGAGGAGCATGGGGTACGCTTCTTTGTTCCTTAC
AATCATCAATATCATATCGGTACGTGCACAACAATTCTCAGTGCTCCATT
TTGTCAAAACGCTAACCGCTTTATCCCGATGCGTTCCTTTTTGCAGTGGA
CAACGCTGTACCAATACTTGCGAGCTTCTCGTGACAACGTTGTGGACAGA
CCTGCCGCAGAGGAAGCTCCTCTTGTGGCGGAAAACTGCTGCACTCCTGA
AGACGAGGCAGACGGACTTAAAGAATCTATCTCACGTGCATTGAAATCTC
CAATCTTCATGTCCATGATTGCAGCCGTGTTTCTCGCATTTGTACGTAAA
ATTTCTACTGCTTCCACAGCTTTCGAAGCACTGACCCATTCTTCATCTCC
AACAGATAAGTCCAGTTGCGAATGCGTTGCTTAACCATGACGGGGCACTG
AGACCAGTTATGCTCTCCATTAATATTCTTGGCAATGTAGTTGTGCCAGT
GAATGCCATTGTTGTGGGAGCCGAATTCTACTTATCAATGGTAGAGGTAC
GTTTTCTCTTTGTCATTCCCATATGAAATAGTACAGCTCTTCCATTTGCT
AACATGCGAGATCGCTCATGTGCAGGATGATAATCGAGAATACGATTATC
AGGAGGACGAAATGTTTGGGAATCGCGTGTTCGCAGTTATCCTTATATGG
CGGTTGATTGTTCTGCCCGCGCTGGCGCGTTTCATATACTCTTCTCTAGG
TTTGGCGTCACAAGTGCACAATCATCTTCTCGGTATATTTGGTTTGATCG
AGTTTAACAATCCTACCGCGAACACAACGGTCATGATGATGTCTTTAGTC
AGAAACAGGCTAAAGCGAGCTGGCAGACAGCTTGGCCGTGATGTTGTGCG
GACAGTGTTCATCCAGTTCTTGTGCACTCCAATCTTCTTGACTATCAACA
CTGCCGCTGCTCTTCAATTGCAATATTCTGGCAGGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2422451..2423891-

>Gvermi6820.t1 ID=Gvermi6820.t1|Name=Gvermi6820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_88:2422451..2423891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCATCTTCTTCGCATATTCTCGGATCTAGCCTGAGCGGCAGCGT
AGAGCTGCTAACGCTTTGTTTCGCAGGCGCATACCTTGTGCATTCTGCAA
TTCTCGATCGTAAGCTGACGAGAAGGCTATCCAAAGCATGCAAAGACATG
TTCATCCCATGCCTTGTATTCGGTTCCATTCTGCACACAGCACGCTCCGC
TATTCACACACTGCTGTCCAAAAATGACTCATTCTCGGCACTGCAAGAAA
TATGGGTTCCCGTGTTTCTCGCTTTTATGGTGTTGGGAATCAGCGCAGTA
TTTGCTATTCCTATTACCAGACTTGTTGCCTTTGACAAGCAGGAGGCTGT
ACGGCGAGCAATTTTCGTATGCCTCGCGCTTGGGAATGCCAACGTTCTTC
CGTTGTTGGTCATGCAATCCCTTTGCGACACGTTCCCCCCCCTGATGGAG
GTACCGCATTGTTACGAGAGGAGCATGGGGTACGCTTCTTTGTTCCTTAC
AATCATCAATATCATATCGTGGACAACGCTGTACCAATACTTGCGAGCTT
CTCGTGACAACGTTGTGGACAGACCTGCCGCAGAGGAAGCTCCTCTTGTG
GCGGAAAACTGCTGCACTCCTGAAGACGAGGCAGACGGACTTAAAGAATC
TATCTCACGTGCATTGAAATCTCCAATCTTCATGTCCATGATTGCAGCCG
TGTTTCTCGCATTTATAAGTCCAGTTGCGAATGCGTTGCTTAACCATGAC
GGGGCACTGAGACCAGTTATGCTCTCCATTAATATTCTTGGCAATGTAGT
TGTGCCAGTGAATGCCATTGTTGTGGGAGCCGAATTCTACTTATCAATGG
TAGAGGATGATAATCGAGAATACGATTATCAGGAGGACGAAATGTTTGGG
AATCGCGTGTTCGCAGTTATCCTTATATGGCGGTTGATTGTTCTGCCCGC
GCTGGCGCGTTTCATATACTCTTCTCTAGGTTTGGCGTCACAAGTGCACA
ATCATCTTCTCGGTATATTTGGTTTGATCGAGTTTAACAATCCTACCGCG
AACACAACGGTCATGATGATGTCTTTAGTCAGAAACAGGCTAAAGCGAGC
TGGCAGACAGCTTGGCCGTGATGTTGTGCGGACAGTGTTCATCCAGTTCT
TGTGCACTCCAATCTTCTTGACTATCAACACTGCCGCTGCTCTTCAATTG
CAATATTCTGGCAGGTCATGA
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