Gvermi6813.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6813.t1
Unique NameGvermi6813.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length169
Homology
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A2V3J3H1_9FLOR (39S ribosomal protein L47, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3H1_9FLOR)

HSP 1 Score: 229 bits (583), Expect = 2.560e-74
Identity = 117/147 (79.59%), Postives = 126/147 (85.71%), Query Frame = 0
Query:   18 RALCNTGKTPQPPPAK-IDSQEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERDGVGLGEAVLQSRTESHGIKTR 163
            R   +T  +P   PAK +DSQ+GVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILL+EKAWCKTN RHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRA+EAL AERDG GL +AV    +   G+ TR
Sbjct:   18 RRSMSTAPSPTAEPAKKLDSQKGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLSEKAWCKTNSRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAKEALLAERDGQGLKDAVAPPASTPQGVATR 164          
BLAST of Gvermi6813.t1 vs. uniprot
Match: R7QV70_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QV70_CHOCR)

HSP 1 Score: 178 bits (451), Expect = 2.570e-54
Identity = 89/139 (64.03%), Postives = 109/139 (78.42%), Query Frame = 0
Query:   27 PQPPPAKIDSQEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERDGV-GLGEAVLQSRTES-HGIKTR 163
            P+ P   +DSQ+GV+QFID    AGA+R GRAWRTSELRLKSY+DLH+LWFILLKERNILLTEK WC+++ RHWVNG SNLYKVKRSMAR+KGVVGER RA++AK+ R+A+  E D   GL +A+ +       G+ TR
Sbjct:   24 PEQPARPLDSQKGVMQFIDGEGGAGASRNGRAWRTSELRLKSYDDLHRLWFILLKERNILLTEKEWCRSHGRHWVNGQSNLYKVKRSMARIKGVVGERLRAFRAKKGRDAMVKESDAPRGLADALGEPTAHGPEGVVTR 162          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A7S0ZDT6_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDT6_9RHOD)

HSP 1 Score: 125 bits (315), Expect = 3.800e-33
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 0
Query:   16 PNRALCNTGKTPQPPP-AKIDSQEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKA 130
            P  AL  +   P+ P  +K    +GV +F++    AG  + GR+W +SELRLKS++DLHKLWF+ LKER +L TE+ WC+ N RHW  G S L+K+K++MAR+K VV ER RAYKA
Sbjct:   28 PKEALERSKAVPKSPVRSKPTDSKGVYEFLEEAGYAGPMKVGRSWTSSELRLKSFDDLHKLWFVCLKERTLLFTEQEWCRANVRHWTGGKSKLWKLKKTMARIKTVVNERVRAYKA 143          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A6T6P0H2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6P0H2_9RHOD)

HSP 1 Score: 107 bits (266), Expect = 2.020e-25
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   36 SQEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAY 128
            SQ GVL+F+D    AG+   GR W  SELRLKS EDL KLW++L+KER IL  EK WC +N + W  G S L KV+ SM+R+K VVGER R Y
Sbjct:   34 SQAGVLEFLDPKGGAGSGPVGRPWLASELRLKSTEDLQKLWYVLIKERTILDIEKQWCDSNGQFWEGGRSRLRKVRTSMSRIKCVVGERIRLY 126          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A5J4YYL8_PORPP (54S ribosomal protein L4, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYL8_PORPP)

HSP 1 Score: 104 bits (260), Expect = 3.760e-24
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   34 IDSQEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKR 132
            +    G+L  +D    A     GR+WR +ELRLKS+EDLHKLW+ILL+ER +L  E+ +C+ N  HW  G S L+K+K SM  +K VVGER +A+KA R
Sbjct:  130 LRDNSGLLDLLDPSGQAAQVPCGRSWRVAELRLKSFEDLHKLWWILLRERAVLHAERHYCRVNGYHWKGGSSRLFKIKTSMRGIKIVVGERKKAFKAAR 228          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A196SNS1_BLAHN (Ribosomal protein L29 family protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SNS1_BLAHN)

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-22
Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   39 GVLQFIDSGTSAGATRT-GRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAY 128
            G+ +F+++ ++AG     GRAW++SELRLKSY+DLHKLW++LLKE+N+LLTEK  CK+ R   +  P  L+KVK SM RLKGV+ ER   Y
Sbjct:   17 GLEEFVEASSTAGKDIVYGRAWKSSELRLKSYDDLHKLWYVLLKEKNLLLTEKYDCKS-RNVVMPHPERLHKVKLSMKRLKGVLAERKVEY 106          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A7S1TNE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNE6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.330e-22
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   37 QEGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREAL 137
            + GV +F+D       T TGRAW   ELR KS++DLHKLWF+L KE+N++LTE+A  +T  R  +  P  L+KVK SMARL+ VV +R +  +A R  +AL
Sbjct:   10 RRGVEEFLDIAHQGADTITGRAWTAKELRKKSFDDLHKLWFVLYKEKNVILTEQARARTLSRE-MTAPERLHKVKLSMARLRHVVDDRRKVLQAARGEQAL 109          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A2R5GKS1_9STRA (54S ribosomal protein L4, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKS1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.640e-21
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 0
Query:   19 ALCNTGKTPQPPPAKIDSQEGVLQFID---SGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRARE 135
            AL     T    PA +    G+ +F D     ++ G   TGRAW   ELRLKS++DL KLWFILLKE+N+LLTEK   ++  +  V G   + KVK SMARLK VV ER+R YKA +  E
Sbjct:   10 ALAGRRPTVGARPAAVT--RGIEEFFDVRGEKSTDGTVETGRAWTADELRLKSFDDLRKLWFILLKEKNMLLTEKHLARSMGQPMV-GADRIRKVKTSMARLKTVVNERSRVYKANKELE 126          
BLAST of Gvermi6813.t1 vs. uniprot
Match: A0A3P3XZJ2_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZJ2_PLABS)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-20
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   52 ATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKA----KRAREALKAE 140
            A   GRAWR +ELRLKS+EDLHKLW++LLKE+N+LLT +   +  +    N P  L KV++SMARLK VVGER RAYKA    K+A EA  AE
Sbjct:  116 AVHVGRAWRANELRLKSFEDLHKLWYVLLKEKNMLLTVRNQNRIQKTIMPN-PGRLKKVRQSMARLKSVVGERVRAYKAAVAKKKAAEANVAE 207          
BLAST of Gvermi6813.t1 vs. uniprot
Match: L8GV09_ACACA (Mitochondrial 39S ribosomal protein L47 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GV09_ACACA)

HSP 1 Score: 91.7 bits (226), Expect = 1.380e-20
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0
Query:   42 QFIDSGTSAGATR-TGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERD 142
            +FID+ T  G     GRAW+ SELRLKS+EDLHKLWF+L KERN+LLTEK   K+  +  +       KV++SMAR+K V+GER   YK  +  + L  E+D
Sbjct:    3 EFIDNATKPGEYPIAGRAWKASELRLKSFEDLHKLWFVLQKERNLLLTEKMLAKSEGKQ-MXXXXXXXKVRQSMARIKLVLGERQHIYKTFKREQILALEQD 103          
The following BLAST results are available for this feature:
BLAST of Gvermi6813.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3H1_9FLOR2.560e-7479.5939S ribosomal protein L47, mitochondrial n=1 Tax=G... [more]
R7QV70_CHOCR2.570e-5464.03Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZDT6_9RHOD3.800e-3350.86Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A6T6P0H2_9RHOD2.020e-2556.99Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YYL8_PORPP3.760e-2449.4954S ribosomal protein L4, mitochondrial n=1 Tax=Po... [more]
A0A196SNS1_BLAHN1.500e-2254.95Ribosomal protein L29 family protein n=1 Tax=Blast... [more]
A0A7S1TNE6_9STRA2.330e-2248.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5GKS1_9STRA4.640e-2147.5054S ribosomal protein L4, mitochondrial n=1 Tax=Ho... [more]
A0A3P3XZJ2_PLABS1.260e-2058.06Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
L8GV09_ACACA1.380e-2050.00Mitochondrial 39S ribosomal protein L47 n=1 Tax=Ac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 53..124
e-value: 7.2E-23
score: 80.5
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 34..138
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 33..136
e-value: 4.9E-26
score: 92.7
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 62..124
e-value: 3.20289E-5
score: 37.8523
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 59..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2369735..2370241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1Gvermi6813.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2369735..2370241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=169bp
MNSRIARHCSRLFRTPNRALCNTGKTPQPPPAKIDSQEGVLQFIDSGTSA
GATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHW
VNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERDGVGLGEAV
LQSRTESHGIKTRANLPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010729Ribosomal_L47_mit
IPR038340MRP-L47_sf
IPR036049Ribosomal_L29/L35_sf