Gvermi6813.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6813.t1
Unique NameGvermi6813.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2369735..2370241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog691883.XP_009496502.1
Preferred nameMRPL4
PFAMsMRP-L47
Max annot lvl33154|Opisthokonta
KEGG koko:K17428
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue4.35e-18
EggNOG OGsKOG3331@1|root,KOG3331@2759|Eukaryota,3A0M2@33154|Opisthokonta
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6813Gvermi6813Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2369735..2370241 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1.stop1Gvermi6813.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2369735..2369737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1.CDS1Gvermi6813.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2369735..2370241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1.exon1Gvermi6813.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2369735..2370241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1.start1Gvermi6813.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2370239..2370241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6813.t1Gvermi6813.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2369735..2370241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=169bp
MNSRIARHCSRLFRTPNRALCNTGKTPQPPPAKIDSQEGVLQFIDSGTSA
GATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHW
VNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERDGVGLGEAV
LQSRTESHGIKTRANLPA*
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spliced messenger RNA

>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp|location=Sequence derived from alignment at ScGOVlb_88:2369735..2370241- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCAGGATCGCTCGCCATTGCTCCCGCTTGTTTCGCACACCCAA
TAGAGCACTATGCAACACCGGTAAAACGCCCCAGCCGCCCCCTGCCAAGA
TCGACTCCCAAGAGGGTGTGCTGCAGTTTATAGATTCTGGCACAAGCGCC
GGAGCCACCCGTACTGGACGTGCGTGGCGCACGTCTGAATTGCGCCTAAA
ATCCTATGAAGATCTTCACAAACTGTGGTTCATTCTCCTCAAGGAACGTA
ACATACTCCTCACTGAAAAGGCTTGGTGCAAGACTAATCGTCGTCATTGG
GTTAATGGACCTTCTAATTTGTACAAGGTGAAGCGTTCTATGGCACGTCT
GAAAGGGGTAGTGGGAGAACGAACCAGAGCTTACAAGGCTAAGCGTGCGA
GAGAAGCTCTCAAGGCTGAGCGGGACGGCGTAGGGCTCGGGGAGGCTGTG
TTGCAGTCTCGCACAGAGAGTCACGGTATCAAGACTAGGGCCAACCTGCC
AGCCTGA
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protein sequence of Gvermi6813.t1

>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=169bp
MNSRIARHCSRLFRTPNRALCNTGKTPQPPPAKIDSQEGVLQFIDSGTSA
GATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLTEKAWCKTNRRHW
VNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAREALKAERDGVGLGEAV
LQSRTESHGIKTRANLPA*
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mRNA from alignment at ScGOVlb_88:2369735..2370241-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp|location=Sequence derived from alignment at ScGOVlb_88:2369735..2370241- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCAGGATCGCTCGCCATTGCTCCCGCTTGTTTCGCACACCCAA
TAGAGCACTATGCAACACCGGTAAAACGCCCCAGCCGCCCCCTGCCAAGA
TCGACTCCCAAGAGGGTGTGCTGCAGTTTATAGATTCTGGCACAAGCGCC
GGAGCCACCCGTACTGGACGTGCGTGGCGCACGTCTGAATTGCGCCTAAA
ATCCTATGAAGATCTTCACAAACTGTGGTTCATTCTCCTCAAGGAACGTA
ACATACTCCTCACTGAAAAGGCTTGGTGCAAGACTAATCGTCGTCATTGG
GTTAATGGACCTTCTAATTTGTACAAGGTGAAGCGTTCTATGGCACGTCT
GAAAGGGGTAGTGGGAGAACGAACCAGAGCTTACAAGGCTAAGCGTGCGA
GAGAAGCTCTCAAGGCTGAGCGGGACGGCGTAGGGCTCGGGGAGGCTGTG
TTGCAGTCTCGCACAGAGAGTCACGGTATCAAGACTAGGGCCAACCTGCC
AGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2369735..2370241-

>Gvermi6813.t1 ID=Gvermi6813.t1|Name=Gvermi6813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=507bp|location=Sequence derived from alignment at ScGOVlb_88:2369735..2370241- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCAGGATCGCTCGCCATTGCTCCCGCTTGTTTCGCACACCCAA
TAGAGCACTATGCAACACCGGTAAAACGCCCCAGCCGCCCCCTGCCAAGA
TCGACTCCCAAGAGGGTGTGCTGCAGTTTATAGATTCTGGCACAAGCGCC
GGAGCCACCCGTACTGGACGTGCGTGGCGCACGTCTGAATTGCGCCTAAA
ATCCTATGAAGATCTTCACAAACTGTGGTTCATTCTCCTCAAGGAACGTA
ACATACTCCTCACTGAAAAGGCTTGGTGCAAGACTAATCGTCGTCATTGG
GTTAATGGACCTTCTAATTTGTACAAGGTGAAGCGTTCTATGGCACGTCT
GAAAGGGGTAGTGGGAGAACGAACCAGAGCTTACAAGGCTAAGCGTGCGA
GAGAAGCTCTCAAGGCTGAGCGGGACGGCGTAGGGCTCGGGGAGGCTGTG
TTGCAGTCTCGCACAGAGAGTCACGGTATCAAGACTAGGGCCAACCTGCC
AGCCTGA
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