Gvermi6799.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6799.t1
Unique Name	Gvermi6799.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	258

Homology

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A2V3J3N6_9FLOR (RNA-binding motif protein, X-linked 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3N6_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 1.730e-85
Identity = 134/183 (73.22%), Postives = 156/183 (85.25%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDSGMDFTPDGFHEA--QEFAEEHISEALAEETATEKRRQAAVMERLQALRKKRRIQAPSKTEKPDS 181
            MNK+  INNLNQTELEQGIAGTTASWHHKY+SSDAI++GGLSPSITE++LLA+LEQYGT+ H+N+VRDA T ESKGYAF RYADPRSCVLAVDNFTG EI+GRNLRVDHVENYRMPED GMD TPDGF E+  Q+   EH       E A E+RRQAAVMERL+ALRK+RR++A ++ E+ D+
Sbjct:    1 MNKVTAINNLNQTELEQGIAGTTASWHHKYLSSDAIYIGGLSPSITENKLLAILEQYGTVRHINLVRDAVTSESKGYAFVRYADPRSCVLAVDNFTGVEIEGRNLRVDHVENYRMPEDGGMDTTPDGFLESHQQDLDVEHTIAPSPVENAAERRRQAAVMERLEALRKRRRLEASTQDERRDA 183

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BLAST of Gvermi6799.t1 vs. uniprot
Match: R7QRZ0_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRZ0_CHOCR)

HSP 1 Score: 160 bits (405), Expect = 1.250e-44
Identity = 89/182 (48.90%), Postives = 119/182 (65.38%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDSG---MDFTP-----------DGFHEAQEFAEEHISEALAEETATEKRRQAAVMERLQALRKKR 168
            M K+  I  LN+TELE+GIAGT+ASWH KY S   I+VGGL  ++TE  LLA+ EQ+G ++ VN+VR+A+T +S+G+AF +Y DPRS VLAVDNFTG E+ GR LRVDH E++++P + G   +D TP            G     E     I+  + +ET  E RR+ AV ER QA+ KKR
Sbjct:    1 MKKVEAIRKLNETELEEGIAGTSASWHQKYESCPFIYVGGLPTALTEGDLLAMFEQFGIVVLVNLVREADTGKSRGFAFLKYHDPRSAVLAVDNFTGTEVGGRTLRVDHAEDFKIPNEPGRGIIDTTPPQLRAEDSSRPSGRPATNESNANEITAVVKKETEKEDRRERAVFERWQAMNKKR 182

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BLAST of Gvermi6799.t1 vs. uniprot
Match: B7FS26_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FS26_PHATC)

HSP 1 Score: 135 bits (341), Expect = 6.670e-37
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I  +N+ EL++G+AGT ASWH +Y  S  ++VG L  ++TE  ++ VL QYG I  +++VR+ +T +S+G+AF +Y D RSCVLAVDNFTG E+ GR+LRVDHVENYR+P
Sbjct:    1 MNTIKEILRINEEELKRGLAGTAASWHQQYAQSAWVYVGNLDHALTEGDVICVLSQYGEIEDLHLVREEDTGKSRGFAFCKYEDARSCVLAVDNFTGIELCGRSLRVDHVENYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A7S4J9N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9N7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.870e-34
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I  +N+ E+E+GI GT ASWH KY  S  ++VG L   +TE  +L ++ Q+G I  +N+VRD +T +SKG+AF +Y D RSCVLAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNVIAEIQRINEVEIERGIVGTPASWHAKYSESAWVYVGNLPHRLTEGDVLCIMSQFGEIEDINLVRDDDTGKSKGFAFVKYEDARSCVLAVDNFCGVKVLGRSIRVDHVEKYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: K0SHL3_THAOC (RRM domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHL3_THAOC)

HSP 1 Score: 131 bits (330), Expect = 5.540e-34
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +N I  +N  ELEQG+  T  SWH KY  S  ++ G L  ++TE  +L +L QYG I  VN+VRD +T +S+G+AF +Y D RSCVLAVDNFTG ++ GR LRVDHVE Y++P
Sbjct:    1 MNVVNEITRINDLELEQGLTHTAGSWHGKYRDSAWVYAGNLPHALTEGDVLCILSQYGEIEDVNLVRDDDTGKSRGFAFVKYEDARSCVLAVDNFTGAQVLGRTLRVDHVERYKLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A448ZMV0_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMV0_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.160e-33
Identity = 58/116 (50.00%), Postives = 86/116 (74.14%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I  +NQ EL++GIAGT+ASWH ++ +S  ++VG L   +TE  +L V+ QYG +  +++VR+ +T +S+G+AF +Y D RSC+LAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNTIREIEKINQQELDRGIAGTSASWHSQFANSAWVYVGNLDHQLTEGDVLCVMSQYGEVEDIHLVREEDTGKSRGFAFLKYEDSRSCILAVDNFCGMKVLGRSIRVDHVEQYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: B8CCB6_THAPS (RRM domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCB6_THAPS)

HSP 1 Score: 125 bits (314), Expect = 1.170e-32
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +N I  +N  ELE+G+  T+ASWH KY  S  I  G L  ++TE  +L +L QYG I  +++VRD ++ +SKG+AF +Y D RSCVLAVDN  G  + GR LRVDHVENYR+P
Sbjct:    1 MNVVNEIQRINDLELEKGLTHTSASWHDKYKDSAWIHAGNLPLNLTEGDVLCILSQYGEIDDIHLVRDKDSGKSKGFAFVKYEDARSCVLAVDNLCGSMVLGRTLRVDHVENYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A1Z5JH77_FISSO (RNA-binding motif protein, X-linked 2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH77_FISSO)

HSP 1 Score: 124 bits (310), Expect = 3.540e-32
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I  +N  ELE+G+AGT  SWH ++  +  ++VG L   +TE  +L +L QYG I   +++RD  T +SKG+ F +Y DP+SC+LAVDN  G +I  R LR+DHVENYR+P
Sbjct:    1 MNTIREIEKINAQELERGLAGTAGSWHSQFAHAPWVYVGNLDHQLTEGDILCILSQYGEIEDAHLIRDEETGKSKGFGFVKYEDPQSCILAVDNLIGVKILDRPLRIDHVENYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A7S3VEH7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEH7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.290e-32
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I+ +N  ELE G+  T ASWH KYI+S  +++G L   ++E  +LAV+ Q+G +  VN+VR+  T +SKG+AF +Y D RSC+LAVDN +G  + GR+LRVDHVENYR+P
Sbjct:    1 MNVIKEIHRINDLELENGMVNTPASWHQKYINSAWVYIGNLPIRLSEGDILAVMSQWGEVEDVNLVREEKTGKSKGFAFLKYEDARSCILAVDNLSGSVVLGRSLRVDHVENYRLP 116

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BLAST of Gvermi6799.t1 vs. uniprot
Match: A0A7S4EI77_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EI77_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.610e-31
Identity = 58/116 (50.00%), Postives = 84/116 (72.41%), Query Frame = 0

Query:    1 MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRLLAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN I  I  +NQ EL++GIAGT ASWH ++ +S  ++VG L   +TE  +L V+ QYG I  +++VR+ +T +S+G+AF +Y D +SC+LAVDNF G  + GR++RVDHVE YR+P
Sbjct:    1 MNTIREIEKINQQELDRGIAGTNASWHSQFANSAWVYVGNLDHQLTEGDVLCVMSQYGEIEDIHLVREEDTGKSRGFAFLKYEDVQSCILAVDNFCGVMVLGRSIRVDHVEQYRLP 116

The following BLAST results are available for this feature:

BLAST of Gvermi6799.t1 vs. uniprot

BLAST of Gvermi6799.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J3N6_9FLOR	1.730e-85	73.22	RNA-binding motif protein, X-linked 2 n=1 Tax=Grac...	[more]
R7QRZ0_CHOCR	1.250e-44	48.90	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
B7FS26_PHATC	6.670e-37	54.31	Predicted protein (Fragment) n=1 Tax=Phaeodactylum...	[more]
A0A7S4J9N7_9STRA	4.870e-34	52.59	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
K0SHL3_THAOC	5.540e-34	53.45	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]
A0A448ZMV0_9STRA	8.160e-33	50.00	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
B8CCB6_THAPS	1.170e-32	52.59	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A1Z5JH77_FISSO	3.540e-32	48.28	RNA-binding motif protein, X-linked 2 n=1 Tax=Fist...	[more]
A0A7S3VEH7_9STRA	5.290e-32	51.72	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S4EI77_9STRA	1.610e-31	50.00	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..257
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..252
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..252
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 2.1E-19 score: 80.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 1.3E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 16.380745
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..197 e-value: 1.8E-21 score: 78.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 17..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2331515..2332288 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1	Gvermi6799.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_88 2331515..2332288 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRL
LAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDSGMDFTPDGFHEAQEFAEEHISEALAEETATE
KRRQAAVMERLQALRKKRRIQAPSKTEKPDSKQPRQASRKEDVEPGATND
KTLLQETNHTIHATVVSSYQTDKEKRRREKDMRRLERARIRRERAERRAK
RDQASNP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf