Gvermi6799.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6799.t1
Unique Name	Gvermi6799.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2331515..2332288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr9701
PFAMs	RRM_1
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K13107
Evalue	8.15e-38
EggNOG OGs	KOG0126@1\|root,KOG0126@2759\|Eukaryota,2XCM7@2836\|Bacillariophyta
Description	Pfam:RRM_6
COG category	A
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6799	Gvermi6799	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2331515..2332288 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1.start1	Gvermi6799.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2331515..2331517 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1.CDS1	Gvermi6799.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2331515..2332288 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1.exon1	Gvermi6799.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2331515..2332288 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1.stop1	Gvermi6799.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2332286..2332288 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6799.t1	Gvermi6799.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2331515..2332288 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2331515..2332288+
coding sequence from alignment at ScGOVlb_88:2331515..2332288+

mRNA sequence

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRL
LAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDSGMDFTPDGFHEAQEFAEEHISEALAEETATE
KRRQAAVMERLQALRKKRRIQAPSKTEKPDSKQPRQASRKEDVEPGATND
KTLLQETNHTIHATVVSSYQTDKEKRRREKDMRRLERARIRRERAERRAK
RDQASNP*

spliced messenger RNA

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA

protein sequence of Gvermi6799.t1

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRL
LAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDSGMDFTPDGFHEAQEFAEEHISEALAEETATE
KRRQAAVMERLQALRKKRRIQAPSKTEKPDSKQPRQASRKEDVEPGATND
KTLLQETNHTIHATVVSSYQTDKEKRRREKDMRRLERARIRRERAERRAK
RDQASNP*

mRNA from alignment at ScGOVlb_88:2331515..2332288+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2331515..2332288+

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA