Gvermi5672.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5672.t1
Unique NameGvermi5672.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length119
Homology
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A2V3IX65_9FLOR (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX65_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 6.490e-60
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGRIGKGXXXXXXXXXXXSRR 118
            MKLVSFLVKLRSETV+VELKNG+TAHGTVTGVDHSMN+HLK VTL VRGRNP KLQALS+RGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDR ++GRIGKGXXXXXXXXXXXSRR
Sbjct:    1 MKLVSFLVKLRSETVSVELKNGTTAHGTVTGVDHSMNIHLKGVTLDVRGRNPVKLQALSVRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRPAAGRIGKGXXXXXXXXXXXSRR 118          
BLAST of Gvermi5672.t1 vs. uniprot
Match: R7QN78_CHOCR (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN78_CHOCR)

HSP 1 Score: 173 bits (438), Expect = 9.490e-54
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQ---SSGRIGKG 104
            MKLV FLVKLRSETVTVELKNG+ AHGTV GVDHSMN+HLK V L +RGRNP KLQALSIRGSTVRYV+LPDSLALD+LLVDDGLRPRRTTNPDR    +SGRIG+G
Sbjct:    1 MKLVRFLVKLRSETVTVELKNGTVAHGTVVGVDHSMNIHLKGVKLELRGRNPTKLQALSIRGSTVRYVLLPDSLALDSLLVDDGLRPRRTTNPDRAPGVASGRIGRG 107          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A7S3ECE2_9RHOD (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECE2_9RHOD)

HSP 1 Score: 132 bits (332), Expect = 9.910e-38
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGR 100
            MKLV FL KLRSETVT+ELKNG+  HGTVTGVDH+MNVHL +V + +RG+NP+ L +LS+RGS++RYVILPDSL +DALLVDD +R R        ++GR
Sbjct:    1 MKLVRFLTKLRSETVTIELKNGTVIHGTVTGVDHAMNVHLSTVKMTLRGKNPSTLDSLSVRGSSIRYVILPDSLNIDALLVDDSIRQRGVPGKPEAAAGR 100          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A1X6NTQ2_PORUM (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTQ2_PORUM)

HSP 1 Score: 124 bits (312), Expect = 2.290e-34
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSS 98
            MKLV+FL+KLR+E VTVELKNGS A GTV+ VDH+MN+HL  V L  RG +P  L +L +RG++VRYV+LPDSL+LDALLVDDGLRP  +T P R  S
Sbjct:    1 MKLVTFLMKLRNEPVTVELKNGSCAAGTVSSVDHAMNIHLTGVRLTARGGSPIALGSLCVRGASVRYVLLPDSLSLDALLVDDGLRPPPSTPPTRSWS 98          
BLAST of Gvermi5672.t1 vs. uniprot
Match: M2XXL6_GALSU (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XXL6_GALSU)

HSP 1 Score: 119 bits (298), Expect = 1.860e-32
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPR 88
            MKL  FL+KL SETVTVELKNG+   GTVTGVDH+MN  LK+V +  RG+NP  L A+S+RGST+RY ILP+SL +D+LLVDD +RPR
Sbjct:    1 MKLTRFLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMSLRGSTIRYFILPESLNVDSLLVDDSIRPR 88          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A6G0SID1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SID1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.710e-32
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTT 91
            MKLV FL+KL +ETVT+ELKNG+  HGT+TGVD SMN HLK+V + V+G+NP  L +LSIRG+ +RY ILPDSL LD LL+DD  R + +T
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKHST 91          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A3G2SCJ1_9BASI (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Malassezia TaxID=55193 RepID=A0A3G2SCJ1_9BASI)

HSP 1 Score: 117 bits (294), Expect = 5.940e-32
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGRIGKG 104
            MKLV FL+KL +E+VT+ELKNG+  HGTVTGVD  MN HLK+V + VRG  P  L  LSIRG+  RY ILPD+L LD LLVDD  RP+     D  + GR  +G
Sbjct:    1 MKLVRFLMKLNNESVTIELKNGTVVHGTVTGVDVQMNTHLKAVKMTVRGGEPMSLDTLSIRGNNTRYWILPDALPLDTLLVDDAPRPKGKRRDDASARGRADRG 104          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A5J4YYK7_PORPP (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYK7_PORPP)

HSP 1 Score: 117 bits (294), Expect = 7.970e-32
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPR 88
            MKLV FL+KL+SETVTVELKNG+  HGTV  VD+SMN+H++ V +  +G+NP  +  +S+RGSTVRYVILPDSL LDALL+D  +RPR
Sbjct:    1 MKLVRFLMKLKSETVTVELKNGTKVHGTVILVDYSMNIHMRGVKMTYKGQNPVHVDFMSVRGSTVRYVILPDSLNLDALLIDYSMRPR 88          
BLAST of Gvermi5672.t1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 118 bits (295), Expect = 7.980e-32
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGRIGKG 104
            MKLV FL+KL +ETVT+ELKNG+  HGT+TGVD SMN HLKSV + V+G+NP  L +LSIRG+ +RY ILPDSL LD LL++D   PR        ++G  G+G
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIED--TPREKVKAGAPAAGGRGRG 102          
BLAST of Gvermi5672.t1 vs. uniprot
Match: A0A7J6PIK9_PEROL (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Alveolata TaxID=33630 RepID=A0A7J6PIK9_PEROL)

HSP 1 Score: 117 bits (293), Expect = 8.430e-32
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 0
Query:    1 MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGRNPAKLQALSIRGSTVRYVILPDSLALDALLVDDG 84
            MKLV FL KL SETVTVELKNG+  HGTVTGVD SMN H+K+V + VRGRNP  +  L+IRGST+RY ILPD + LD LL+DDG
Sbjct:    1 MKLVRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGSTIRYFILPDHIPLDTLLIDDG 84          
The following BLAST results are available for this feature:
BLAST of Gvermi5672.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX65_9FLOR6.490e-6091.53Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Grac... [more]
R7QN78_CHOCR9.490e-5483.18Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Chon... [more]
A0A7S3ECE2_9RHOD9.910e-3864.00Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Rhod... [more]
A0A1X6NTQ2_PORUM2.290e-3465.31Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Porp... [more]
M2XXL6_GALSU1.860e-3265.91Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Gald... [more]
A0A6G0SID1_9STRA4.710e-3262.64Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Phyt... [more]
A0A3G2SCJ1_9BASI5.940e-3257.69Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Mala... [more]
A0A5J4YYK7_PORPP7.970e-3264.77Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Porp... [more]
K3WSY3_GLOUD7.980e-3257.69Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
A0A7J6PIK9_PEROL8.430e-3269.05Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Alve... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..118
NoneNo IPR availableGENE3D2.30.30.100coord: 1..82
e-value: 2.4E-31
score: 109.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..118
NoneNo IPR availablePANTHERPTHR23338:SF39SMALL NUCLEAR RIBONUCLEOPROTEIN SMD1Bcoord: 1..114
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 7.3E-15
score: 65.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..70
e-value: 8.0E-18
score: 63.9
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..114
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..86
e-value: 2.58923E-42
score: 132.349
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:969461..969817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1Gvermi5672.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 969461..969817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=119bp
MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGR
NPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGR
IGKGRGRGRGRGRARSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034102Sm_D1
IPR010920LSM_dom_sf