Gvermi5610.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5610.t1
Unique NameGvermi5610.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length250
Homology
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A2V3IPX2_9FLOR (Polyadenylate-binding protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX2_9FLOR)

HSP 1 Score: 292 bits (747), Expect = 1.080e-96
Identity = 153/197 (77.66%), Postives = 171/197 (86.80%), Query Frame = 0
Query:   53 EDEKPATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY 249
            +++KP TDLD+ELE MKKRLLEMEQESFP+NAEN+ D +++    + SA  NAA   + + N   + I  +DAVADAD+RSIYVGNVDYSAT EELSKYFEECGTINRVTIITHKPT TPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTN+PG+ RG RGRGRFFRGGRS+YHYGRRPRGRPRGRWVPY
Sbjct:   57 DEDKPGTDLDTELEAMKKRLLEMEQESFPVNAENNADPNSEGGPTAQSAPKNAATARAADVNQPRSPIGGDDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNLPGMTRG-RGRGRFFRGGRSAYHYGRRPRGRPRGRWVPY 252          
BLAST of Gvermi5610.t1 vs. uniprot
Match: UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59)

HSP 1 Score: 172 bits (436), Expect = 7.840e-50
Identity = 110/202 (54.46%), Postives = 133/202 (65.84%), Query Frame = 0
Query:   52 QEDEKPATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLA----RGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY 249
            QE E    D+D+ELE MKKRL EME E+  + A  +G  D        SAAT  A +   +   +  G +AE      D+RSIYVGNVDY+AT EEL  +F +CGTINRVTI+ +K T TPKG+AY+EF DQ AV+NA+ILNE+ F+GR LK+T KRTNVPGLA    RG RGRG F   GR    +GR   GRPRGRWVPY
Sbjct:   53 QEGEDDPEDVDAELEAMKKRLKEMEDEANAVKAAGAGGTDG------TSAATGRADRMGEDYGASLIGPSAES-----DARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFAYIEFVDQDAVKNAVILNESPFRGRALKVTPKRTNVPGLAVRGGRGGRGRGVFGYRGRG---FGR---GRPRGRWVPY 237          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A7S0ZAS5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAS5_9RHOD)

HSP 1 Score: 144 bits (363), Expect = 3.640e-39
Identity = 91/189 (48.15%), Postives = 119/189 (62.96%), Query Frame = 0
Query:   61 LDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY 249
            +D+EL  MK+RL EME E+  L+   +G   ND   G            S + N        +D+    D++S+YVGNVDY AT EEL  +F++CGT+NRVTI+ +K T  PKG+AY+EF D+ AV+NA ILN++MF+GR LK+T KRTNVPG+    RGRGR    GRSS   GR  RG  RGR+ PY
Sbjct:   52 VDAELAAMKQRLKEMEMEAMKLSELQNGSGANDGNGGE-----------STKLN--------QDSQETIDAKSVYVGNVDYGATPEELQIHFQDCGTVNRVTILCNKFTGHPKGFAYIEFSDEDAVKNATILNDSMFRGRALKVTPKRTNVPGMG-DFRGRGR----GRSSR--GRFTRGGYRGRYAPY 214          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A4P9WQJ9_9FUNG (RRM domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WQJ9_9FUNG)

HSP 1 Score: 134 bits (337), Expect = 7.830e-36
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 0
Query:  101 AATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFF----RGGRSSYHYGRRPRGRPRG 244
            A  ++A+ AS+EA   GA    +++    DSRSIY+GNVDYSAT EE+  +F  CGTINRVTI+  K T  PKG+AYVEF D   V  AL+LN+++FKGR +K+TAKRTN+PG++  ARGRGR      RGGR  Y  G R R   RG
Sbjct:   26 AEVDSASGASVEAG--GAAEGTDESKEAVDSRSIYIGNVDYSATPEEIQAHFRSCGTINRVTILCDKWTGHPKGFAYVEFADPSLVSTALVLNDSLFKGRLIKVTAKRTNIPGMS--ARGRGRXXGYDPRGGRGGYRGGFRGRATYRG 169          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A4Q1BG79_TREME (Polyadenylate-binding protein 2 n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BG79_TREME)

HSP 1 Score: 134 bits (338), Expect = 9.070e-36
Identity = 81/167 (48.50%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   61 LDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFFRG 227
            +D EL  M+ RL +ME E   + A  S                + A K   E     A +  EDA A  D+RS+Y+GNVDY AT EE+  +F+ CGTINRVTI+  K T  PKGYAYVEF +   VQNAL+LN++MF+GR L +  KRTN+PG+ RG RGRGR FRG
Sbjct:   20 VDEELSLMQARLAQMEAEKNAIAAGGSK--------------PSPAPKIQGEEGEGDASMEDEDAPAAVDARSVYIGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPSIVQNALVLNDSMFRGRLLSVREKRTNIPGMNRG-RGRGRGFRG 171          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A5C3EYE1_9BASI (Related to poly(A) binding protein II n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3EYE1_9BASI)

HSP 1 Score: 135 bits (340), Expect = 9.210e-36
Identity = 82/170 (48.24%), Postives = 105/170 (61.76%), Query Frame = 0
Query:   58 ATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGI-AAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFFR 226
            A D ++E+E MKKR+ EME E+  L                   A  AAA         GAGI   E+   + DSRS+YVGNVDY AT EE+ ++F+ CGTINRVTI+  K T  PKGYAYVEF D   V NA++LNE++F+GR +K+TAKRTN+PG+A   RG  R +R
Sbjct:   49 AMDEEAEIEAMKKRVAEMEAEAAKLREMQE--------------AAGAAA---------GAGIHPTEEEKEEVDSRSVYVGNVDYGATPEEIQQHFQSCGTINRVTILCDKFTGHPKGYAYVEFADPSLVANAMVLNESLFRGRLIKVTAKRTNLPGMAARGRGXXRGYR 195          
BLAST of Gvermi5610.t1 vs. uniprot
Match: M2XI03_GALSU (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XI03_GALSU)

HSP 1 Score: 134 bits (338), Expect = 1.270e-35
Identity = 90/199 (45.23%), Postives = 113/199 (56.78%), Query Frame = 0
Query:   60 DLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFF-RG----GRSSYHYGRRPRG----RPRGRWVPY 249
            D+D+ELE MKKRL EME+E+  L                         K   E + +    + E      D RS+YVGNVDY +T EEL  +F+ECGTINRVTI+  K T  PKG+AY+EF  +    NA+ILNE++F+GR LK++ KRTNVPG++   RGRGR F RG    GR     G R RG    R RGR  PY
Sbjct:   30 DVDAELEAMKKRLQEMEEEANRL-------------------------KEVQEQSASEVPSSEE-----VDRRSVYVGNVDYGSTPEELQAHFKECGTINRVTILCDKFTGHPKGFAYIEFATEEGANNAVILNESLFRGRNLKVSIKRTNVPGISTTDRGRGRGFPRGIGFRGRGGLRGGFRGRGYHGFRGRGRMTPY 198          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A835GTQ3_SPOEX (RRM domain-containing protein n=20 Tax=Ditrysia TaxID=37567 RepID=A0A835GTQ3_SPOEX)

HSP 1 Score: 135 bits (339), Expect = 1.570e-35
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 0
Query:  128 DADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLA------RGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY 249
            +AD+RS+YVGNVDY AT+EEL ++F  CG+INRVTI+ +K    PKG+AY+EF D+ +VQ A+ ++E++F+GRQ+K+  KRTN PGL+      R  RGRGR FRGG S Y+ G RP    RGR+ PY
Sbjct:   93 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKFDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSTTNRPPRAMRGRGRSFRGGFSPYYSGYRPV--RRGRYNPY 218          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A0G4IXZ7_PLABS (RRM domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXZ7_PLABS)

HSP 1 Score: 134 bits (337), Expect = 2.130e-35
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query:   58 ATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVA-------DADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGRFFRG-GRSSYHYGRRPRGRPRGRWVPY 249
            ++D  +++E MK+R+ EME+E+  +          +AT+ ++ ++T   A A+ +A+   AG A+    A       D+D RS+YVGNVDY  T EEL  +F+ CG +NR+TI+  K T  PKGYAYVEF DQ +V NA++LN++ F+ R LKI+ KRTNVPG ARG R  G   RG GR    YGR    R RGR  P+
Sbjct:   14 SSDDITDVEAMKRRVKEMEEEAAKI----------EATIAADPSSTTLPAGAASDASGKDAGAASGSNAASVVVNGPDSDLRSVYVGNVDYGTTPEELQTFFQSCGVVNRITIVCDKMTGHPKGYAYVEFVDQESVANAMLLNDSEFRSRVLKISPKRTNVPGFARGQRRFGGRRRGAGRFPGGYGRF---RGRGRRAPH 200          
BLAST of Gvermi5610.t1 vs. uniprot
Match: A0A3G2S145_9BASI (Polyadenylate-binding protein 2 n=1 Tax=Malassezia restricta CBS 7877 TaxID=425264 RepID=A0A3G2S145_9BASI)

HSP 1 Score: 134 bits (336), Expect = 3.640e-35
Identity = 85/174 (48.85%), Postives = 110/174 (63.22%), Query Frame = 0
Query:   62 DSELERMKKRLLEMEQESFPLNAEN-SGDQDNDATMGSNSAATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSKYFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGLARGARGRGR------FFRGG 228
            D++LE MK+R+ EME E+  L   N + +QD     GS S A +   +  ME                 DSRSIYVGNVDY AT EE+ ++F+ CGTINRVTI+  K T  PKG+AYVEF D + V+NA +LNE++F+GR LK+T KRTNVPG+  G RGRGR      ++RGG
Sbjct:   41 DADLEAMKQRVAEMEAEAAKLREMNETAEQD---IQGSASVAAHPTDEEKMEV----------------DSRSIYVGNVDYGATPEEIQQHFQSCGTINRVTILCDKFTGHPKGFAYVEFADANFVENAAVLNESLFRGRLLKVTPKRTNVPGV--GFRGRGRXXXXXGWYRGG 193          
The following BLAST results are available for this feature:
BLAST of Gvermi5610.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPX2_9FLOR1.080e-9677.66Polyadenylate-binding protein 1 n=1 Tax=Gracilario... [more]
UPI001E1D9E597.840e-5054.46polyadenylate-binding protein 2-like n=1 Tax=Merce... [more]
A0A7S0ZAS5_9RHOD3.640e-3948.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A4P9WQJ9_9FUNG7.830e-3653.38RRM domain-containing protein n=1 Tax=Blyttiomyces... [more]
A0A4Q1BG79_TREME9.070e-3648.50Polyadenylate-binding protein 2 n=1 Tax=Tremella m... [more]
A0A5C3EYE1_9BASI9.210e-3648.24Related to poly(A) binding protein II n=1 Tax=Pseu... [more]
M2XI03_GALSU1.270e-3545.23RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
A0A835GTQ3_SPOEX1.570e-3554.69RRM domain-containing protein n=20 Tax=Ditrysia Ta... [more]
A0A0G4IXZ7_PLABS2.130e-3544.00RRM domain-containing protein n=1 Tax=Plasmodiopho... [more]
A0A3G2S145_9BASI3.640e-3548.85Polyadenylate-binding protein 2 n=1 Tax=Malassezia... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR23236:SF12EUKARYOTIC INITIATION FACTOR 4B-RELATEDcoord: 46..239
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 46..239
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 133..205
e-value: 4.40182E-38
score: 125.867
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 133..205
e-value: 9.6E-22
score: 88.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 134..203
e-value: 6.6E-18
score: 64.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 132..209
score: 16.84124
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 102..246
e-value: 1.1E-27
score: 98.9
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 126..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:741357..742312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1Gvermi5610.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 741357..742312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=250bp
MATSEEEAVLETNFQEAETANVSDKEMHSVEQNGEENQQKTGPPDEQSEN
NQEDEKPATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNS
AATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSK
YFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGR
QLKITAKRTNVPGLARGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf