Gvermi5610.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5610.t1
Unique NameGvermi5610.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:741357..742312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ68241
Preferred namePABPN1
PFAMsBH4,Bcl-2,RRM_1
Max annot lvl33208|Metazoa
KEGG koko:K02163,ko:K14396
KEGG TC1.A.21.1.5
KEGG Pathwayko03015,ko05164,ko05206,map03015,map05164,map05206
GOsGO:0000003,GO:0000165,GO:0000288,GO:0000289,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0002237,GO:0003008,GO:0003012,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006468,GO:0006611,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0006936,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007283,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008630,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016070,GO:0016071,GO:0016234,GO:0016310,GO:0016973,GO:0018130,GO:0019048,GO:0019054,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019867,GO:0019899,GO:0019904,GO:0019953,GO:0022414,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031503,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032496,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0033993,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0035821,GO:0036211,GO:0038034,GO:0039656,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043621,GO:0043631,GO:0044003,GO:0044068,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046700,GO:0046778,GO:0046907,GO:0046982,GO:0046983,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0060049,GO:0060050,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070717,GO:0070727,GO:0070887,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097136,GO:0097159,GO:0097190,GO:0097191,GO:0097192,GO:0097193,GO:0097659,GO:0097718,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1903018,GO:1903020,GO:1903311,GO:1904245,GO:1904247,GO:1990904,GO:2000112,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue2.08e-35
EggNOG OGsKOG4209@1|root,KOG4209@2759|Eukaryota,393XN@33154|Opisthokonta,3BICN@33208|Metazoa,3CZWB@33213|Bilateria,41UPC@6656|Arthropoda,3SIUD@50557|Insecta,4464E@7088|Lepidoptera
DescriptionRNA recognition motif
COG categoryA
BRITEko00000,ko00001,ko01009,ko02000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5610Gvermi5610Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 741357..742312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1Gvermi5610.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 741357..742312 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1.start1Gvermi5610.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 741357..741359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1.CDS1Gvermi5610.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 741357..741545 +
Gvermi5610.t1.CDS2Gvermi5610.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 741647..741871 +
Gvermi5610.t1.CDS3Gvermi5610.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 741977..742312 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1.exon1Gvermi5610.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 741357..741545 +
Gvermi5610.t1.exon2Gvermi5610.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 741647..741871 +
Gvermi5610.t1.exon3Gvermi5610.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 741977..742312 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1.intron1Gvermi5610.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 741546..741646 +
Gvermi5610.t1.intron2Gvermi5610.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 741872..741976 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5610.t1.stop1Gvermi5610.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 742310..742312 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=250bp
MATSEEEAVLETNFQEAETANVSDKEMHSVEQNGEENQQKTGPPDEQSEN
NQEDEKPATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNS
AATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSK
YFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGR
QLKITAKRTNVPGLARGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY*
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spliced messenger RNA

>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=750bp|location=Sequence derived from alignment at ScGOVlb_776:741357..742312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCAGTGAAGAGGAGGCTGTCCTGGAGACCAACTTTCAAGAAGC
CGAGACGGCTAATGTATCTGACAAGGAAATGCACTCCGTCGAGCAGAACG
GAGAAGAAAATCAACAAAAGACTGGCCCCCCTGACGAGCAATCCGAAAAC
AACCAGGAGGATGAAAAGCCCGCTACTGACCTCGATTCGGAGCTTGAAAG
AATGAAAAAACGTTTGCTTGAGATGGAACAGGAATCTTTTCCGCTAAACG
CAGAGAATTCGGGCGACCAAGATAATGATGCCACTATGGGGTCCAACTCT
GCGGCCACCAACGCCGCTGCAAAGGCATCCATGGAGGCCAATGTGGCAGG
TGCTGGCATTGCAGCCGAAGATGCAGTTGCCGATGCTGACTCAAGGTCAA
TATATGTTGGAAATGTTGACTACAGTGCGACAAGTGAAGAATTGAGCAAG
TATTTCGAAGAGTGTGGGACAATCAACAGAGTAACAATCATTACACACAA
GCCGACCAGAACCCCAAAAGGGTACGCTTATGTGGAGTTCAAGGATCAGC
ATGCTGTTCAAAATGCGCTTATCTTGAATGAAGCCATGTTCAAAGGGCGG
CAACTCAAGATTACAGCGAAGAGAACCAATGTACCCGGGTTGGCGAGAGG
TGCGAGGGGAAGAGGGCGTTTCTTTCGTGGAGGGCGATCGTCTTATCACT
ATGGACGTCGGCCTCGTGGTCGCCCTCGTGGGCGGTGGGTCCCGTATTGA
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protein sequence of Gvermi5610.t1

>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=250bp
MATSEEEAVLETNFQEAETANVSDKEMHSVEQNGEENQQKTGPPDEQSEN
NQEDEKPATDLDSELERMKKRLLEMEQESFPLNAENSGDQDNDATMGSNS
AATNAAAKASMEANVAGAGIAAEDAVADADSRSIYVGNVDYSATSEELSK
YFEECGTINRVTIITHKPTRTPKGYAYVEFKDQHAVQNALILNEAMFKGR
QLKITAKRTNVPGLARGARGRGRFFRGGRSSYHYGRRPRGRPRGRWVPY*
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mRNA from alignment at ScGOVlb_776:741357..742312+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=956bp|location=Sequence derived from alignment at ScGOVlb_776:741357..742312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCAGTGAAGAGGAGGCTGTCCTGGAGACCAACTTTCAAGAAGC
CGAGACGGCTAATGTATCTGACAAGGAAATGCACTCCGTCGAGCAGAACG
GAGAAGAAAATCAACAAAAGACTGGCCCCCCTGACGAGCAATCCGAAAAC
AACCAGGAGGATGAAAAGCCCGCTACTGACCTCGATTCGGTATGTTGTTT
CTTCTCAACCGCTTCCTATCCTTCAAACTGTCGTTCCAAATCACCCAATA
TCTGACACCCCATATTCAATTTGAACCTTTGTGCCCGAAGGAGCTTGAAA
GAATGAAAAAACGTTTGCTTGAGATGGAACAGGAATCTTTTCCGCTAAAC
GCAGAGAATTCGGGCGACCAAGATAATGATGCCACTATGGGGTCCAACTC
TGCGGCCACCAACGCCGCTGCAAAGGCATCCATGGAGGCCAATGTGGCAG
GTGCTGGCATTGCAGCCGAAGATGCAGTTGCCGATGCTGACTCAAGGTCA
ATATATGTTGGAAATGTACGTTCACATCCCGTCCAATGACTCATCATAAG
GTTTTTATGCTCTTGGTCAGCACATCTCTAACAATCATCGTGTTTGGCTT
TTCTCGTCTCTCAAATGCAGGTTGACTACAGTGCGACAAGTGAAGAATTG
AGCAAGTATTTCGAAGAGTGTGGGACAATCAACAGAGTAACAATCATTAC
ACACAAGCCGACCAGAACCCCAAAAGGGTACGCTTATGTGGAGTTCAAGG
ATCAGCATGCTGTTCAAAATGCGCTTATCTTGAATGAAGCCATGTTCAAA
GGGCGGCAACTCAAGATTACAGCGAAGAGAACCAATGTACCCGGGTTGGC
GAGAGGTGCGAGGGGAAGAGGGCGTTTCTTTCGTGGAGGGCGATCGTCTT
ATCACTATGGACGTCGGCCTCGTGGTCGCCCTCGTGGGCGGTGGGTCCCG
TATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:741357..742312+

>Gvermi5610.t1 ID=Gvermi5610.t1|Name=Gvermi5610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=750bp|location=Sequence derived from alignment at ScGOVlb_776:741357..742312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCAGTGAAGAGGAGGCTGTCCTGGAGACCAACTTTCAAGAAGC
CGAGACGGCTAATGTATCTGACAAGGAAATGCACTCCGTCGAGCAGAACG
GAGAAGAAAATCAACAAAAGACTGGCCCCCCTGACGAGCAATCCGAAAAC
AACCAGGAGGATGAAAAGCCCGCTACTGACCTCGATTCGGAGCTTGAAAG
AATGAAAAAACGTTTGCTTGAGATGGAACAGGAATCTTTTCCGCTAAACG
CAGAGAATTCGGGCGACCAAGATAATGATGCCACTATGGGGTCCAACTCT
GCGGCCACCAACGCCGCTGCAAAGGCATCCATGGAGGCCAATGTGGCAGG
TGCTGGCATTGCAGCCGAAGATGCAGTTGCCGATGCTGACTCAAGGTCAA
TATATGTTGGAAATGTTGACTACAGTGCGACAAGTGAAGAATTGAGCAAG
TATTTCGAAGAGTGTGGGACAATCAACAGAGTAACAATCATTACACACAA
GCCGACCAGAACCCCAAAAGGGTACGCTTATGTGGAGTTCAAGGATCAGC
ATGCTGTTCAAAATGCGCTTATCTTGAATGAAGCCATGTTCAAAGGGCGG
CAACTCAAGATTACAGCGAAGAGAACCAATGTACCCGGGTTGGCGAGAGG
TGCGAGGGGAAGAGGGCGTTTCTTTCGTGGAGGGCGATCGTCTTATCACT
ATGGACGTCGGCCTCGTGGTCGCCCTCGTGGGCGGTGGGTCCCGTATTGA
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