Gvermi5561.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5561.t1
Unique NameGvermi5561.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length133
Homology
BLAST of Gvermi5561.t1 vs. uniprot
Match: A0A2V3IY64_9FLOR (Sm protein F n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY64_9FLOR)

HSP 1 Score: 152 bits (385), Expect = 8.170e-46
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0
Query:   38 MATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIRPGLAAS 119
            M +K TH+NP PFL SL GKPVIVKLKWGMEYRG+LKSVD YMNIQLEN+EEWVDGAMDG LGEILIRCNNVLYIRPGLAAS
Sbjct:    1 MTSKQTHVNPTPFLHSLIGKPVIVKLKWGMEYRGFLKSVDKYMNIQLENSEEWVDGAMDGHLGEILIRCNNVLYIRPGLAAS 82          
BLAST of Gvermi5561.t1 vs. uniprot
Match: R7QKP6_CHOCR (Sm protein F n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP6_CHOCR)

HSP 1 Score: 146 bits (369), Expect = 2.100e-43
Identity = 68/88 (77.27%), Postives = 80/88 (90.91%), Query Frame = 0
Query:   38 MATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIRPGLAASAASADD 125
            M++KS+ I+PKPFL SLTGKPVIVKLKWG+EYRG+L SVDNYMN+QLEN+EEW+DGAM  +LGEILIRCNNVLYIRPGLAA+A+   D
Sbjct:    1 MSSKSSVIHPKPFLASLTGKPVIVKLKWGLEYRGHLTSVDNYMNLQLENSEEWIDGAMADKLGEILIRCNNVLYIRPGLAATASEPAD 88          
BLAST of Gvermi5561.t1 vs. uniprot
Match: UPI000521808D (small nuclear ribonucleoprotein F n=2 Tax=Archelosauria TaxID=1329799 RepID=UPI000521808D)

HSP 1 Score: 127 bits (318), Expect = 1.950e-35
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   37 SMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            S  TKS  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   20 SAKTKSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 96          
BLAST of Gvermi5561.t1 vs. uniprot
Match: UPI0013F29DD5 (small nuclear ribonucleoprotein F-like n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F29DD5)

HSP 1 Score: 126 bits (316), Expect = 4.430e-35
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0
Query:   26 ATRPGFPFPGVSMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            A RP  P   V+ A +S  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   14 APRPD-PAVVVTCAPQSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 100          
BLAST of Gvermi5561.t1 vs. uniprot
Match: G3WG39_SARHA (Sm protein F n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WG39_SARHA)

HSP 1 Score: 127 bits (319), Expect = 5.400e-35
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 0
Query:   35 GVSMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            G    TKS  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   64 GAVSTTKSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 142          
BLAST of Gvermi5561.t1 vs. uniprot
Match: A0A811PTF8_9POAL (Sm protein F n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811PTF8_9POAL)

HSP 1 Score: 126 bits (316), Expect = 6.940e-35
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 0
Query:   35 GVSMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIRPGLAASAASADDE 126
            G + A K+  +NPKPFL +LTGKPVIVKLKWGMEY+GYL SVD+YMN+QL NTEE++DG   G LGEILIRCNNVLY+R G+   A   D E
Sbjct:   38 GRATAGKTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLR-GVPEDAEIEDAE 128          
BLAST of Gvermi5561.t1 vs. uniprot
Match: A0A8B9C1D5_9AVES (Sm protein F n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9C1D5_9AVES)

HSP 1 Score: 127 bits (320), Expect = 9.270e-35
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 0
Query:    6 WPRVRFVDHIAAKLVYALKGATRPGFPFPGVSMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            W R R       +L ++ +   RP    P  +    S  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   72 WKRPR------RRLPFSRRSRVRPALLGPRRAPVAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 173          
BLAST of Gvermi5561.t1 vs. uniprot
Match: UPI00193AA6C8 (small nuclear ribonucleoprotein F-like n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AA6C8)

HSP 1 Score: 124 bits (310), Expect = 1.680e-34
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 0
Query:   45 INPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            +NPKPF+ SLTGKPVIVKLKWGMEY+GYL SVD YMN+QL NTEE+VDGA+ G LGEILIRCNNVLYIR
Sbjct:    6 MNPKPFINSLTGKPVIVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALSGHLGEILIRCNNVLYIR 74          
BLAST of Gvermi5561.t1 vs. uniprot
Match: UPI000549CEA6 (small nuclear ribonucleoprotein F n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI000549CEA6)

HSP 1 Score: 125 bits (314), Expect = 2.050e-34
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 0
Query:   30 GFPFPGVSMATKSTHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            G   P  +++ +S  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   45 GLRKPQPALSPQSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 128          
BLAST of Gvermi5561.t1 vs. uniprot
Match: G1KPF7_ANOCA (Sm protein F n=16 Tax=Euteleostomi TaxID=117571 RepID=G1KPF7_ANOCA)

HSP 1 Score: 123 bits (309), Expect = 2.240e-34
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 0
Query:   42 STHINPKPFLLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELGEILIRCNNVLYIR 113
            S  +NPKPFL  LTGKPV+VKLKWGMEY+GYL SVD YMN+QL NTEE++DGAM G LGE+LIRCNNVLYIR
Sbjct:    1 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAMSGHLGEVLIRCNNVLYIR 72          
The following BLAST results are available for this feature:
BLAST of Gvermi5561.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY64_9FLOR8.170e-4686.59Sm protein F n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QKP6_CHOCR2.100e-4377.27Sm protein F n=1 Tax=Chondrus crispus TaxID=2769 R... [more]
UPI000521808D1.950e-3575.32small nuclear ribonucleoprotein F n=2 Tax=Archelos... [more]
UPI0013F29DD54.430e-3569.32small nuclear ribonucleoprotein F-like n=1 Tax=Che... [more]
G3WG39_SARHA5.400e-3573.42Sm protein F n=1 Tax=Sarcophilus harrisii TaxID=93... [more]
A0A811PTF8_9POAL6.940e-3566.30Sm protein F n=1 Tax=Miscanthus lutarioriparius Ta... [more]
A0A8B9C1D5_9AVES9.270e-3557.41Sm protein F n=1 Tax=Anser brachyrhynchus TaxID=13... [more]
UPI00193AA6C81.680e-3482.61small nuclear ribonucleoprotein F-like n=2 Tax=Sty... [more]
UPI000549CEA62.050e-3467.86small nuclear ribonucleoprotein F n=1 Tax=Meleagri... [more]
G1KPF7_ANOCA2.240e-3477.78Sm protein F n=16 Tax=Euteleostomi TaxID=117571 Re... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 49..114
e-value: 6.9E-25
score: 98.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 50..114
e-value: 1.6E-21
score: 75.8
NoneNo IPR availableGENE3D2.30.30.100coord: 36..114
e-value: 6.4E-32
score: 111.1
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 42..114
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 42..114
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 46..113
e-value: 2.57577E-48
score: 147.359
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 47..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:549401..549985 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1Gvermi5561.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 549401..549985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=133bp
MRLLHWPRVRFVDHIAAKLVYALKGATRPGFPFPGVSMATKSTHINPKPF
LLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELG
EILIRCNNVLYIRPGLAASAASADDEIRPMTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR034100Sm_F
IPR010920LSM_dom_sf