Gvermi5561.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5561.t1
Unique NameGvermi5561.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:549401..549985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13616.ENSMODP00000010061
Preferred nameSNRPF
PFAMsLSM
Max annot lvl33208|Metazoa
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005683,GO:0005684,GO:0005685,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Evalue1.6e-35
EggNOG OGsKOG3482@1|root,KOG3482@2759|Eukaryota,3A5K1@33154|Opisthokonta,3BRDZ@33208|Metazoa,3D86D@33213|Bilateria,48FA6@7711|Chordata,49C8D@7742|Vertebrata,3JHJN@40674|Mammalia,4K5TY@9263|Metatheria
DescriptionSmall nuclear ribonucleoprotein polypeptide F
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5561Gvermi5561Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 549401..549985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1Gvermi5561.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 549401..549985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1.stop1Gvermi5561.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 549401..549403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1.CDS1Gvermi5561.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 549401..549588 -
Gvermi5561.t1.CDS2Gvermi5561.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 549684..549780 -
Gvermi5561.t1.CDS3Gvermi5561.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 549872..549985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1.exon1Gvermi5561.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 549401..549588 -
Gvermi5561.t1.exon2Gvermi5561.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 549684..549780 -
Gvermi5561.t1.exon3Gvermi5561.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 549872..549985 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1.intron1Gvermi5561.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 549589..549683 -
Gvermi5561.t1.intron2Gvermi5561.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 549781..549871 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5561.t1.start1Gvermi5561.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 549983..549985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=133bp
MRLLHWPRVRFVDHIAAKLVYALKGATRPGFPFPGVSMATKSTHINPKPF
LLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELG
EILIRCNNVLYIRPGLAASAASADDEIRPMTT*
back to top

spliced messenger RNA

>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp|location=Sequence derived from alignment at ScGOVlb_776:549401..549985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTCTCCACTGGCCGCGCGTCCGCTTCGTCGACCACATCGCCGC
CAAACTTGTGTATGCGTTGAAGGGTGCCACTCGACCCGGCTTCCCCTTTC
CTGGCGTAAGTATGGCAACCAAATCGACGCACATCAACCCCAAGCCTTTC
CTGCTCTCCCTCACCGGGAAGCCGGTGATTGTCAAGCTCAAATGGGGCAT
GGAATACAGAGGCTACCTCAAGTCCGTGGACAACTACATGAACATTCAAC
TCGAAAATACCGAGGAATGGGTGGATGGCGCTATGGACGGCGAGCTCGGC
GAGATTCTCATCCGCTGCAACAACGTGTTGTACATACGCCCGGGGCTCGC
CGCCTCCGCGGCCTCCGCCGACGACGAAATCAGGCCCATGACCACGTAG
back to top

protein sequence of Gvermi5561.t1

>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=133bp
MRLLHWPRVRFVDHIAAKLVYALKGATRPGFPFPGVSMATKSTHINPKPF
LLSLTGKPVIVKLKWGMEYRGYLKSVDNYMNIQLENTEEWVDGAMDGELG
EILIRCNNVLYIRPGLAASAASADDEIRPMTT*
back to top

mRNA from alignment at ScGOVlb_776:549401..549985-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=585bp|location=Sequence derived from alignment at ScGOVlb_776:549401..549985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTCTCCACTGGCCGCGCGTCCGCTTCGTCGACCACATCGCCGC
CAAACTTGTGTATGCGTTGAAGGGTGCCACTCGACCCGGCTTCCCCTTTC
CTGGCGTAAGTATGGTGAGTATCAGAGGCAACCGCGCTGTCCCCTTGCTC
ATGACAGGCCCGCACTGACAGATCCCCCTCTTAATCTCGTTTTCCGCCCC
GGCAGGCAACCAAATCGACGCACATCAACCCCAAGCCTTTCCTGCTCTCC
CTCACCGGGAAGCCGGTGATTGTCAAGCTCAAATGGGGCATGGAATACAG
AGGTACGTACACTGGCCGCCCCCTTTGCCCTCCGCGCGTTACACTTCAGT
TCTGACCTGTCTTTGCTCCGACGGGTCATGTGTGCGTGTGTGCAAAGGCT
ACCTCAAGTCCGTGGACAACTACATGAACATTCAACTCGAAAATACCGAG
GAATGGGTGGATGGCGCTATGGACGGCGAGCTCGGCGAGATTCTCATCCG
CTGCAACAACGTGTTGTACATACGCCCGGGGCTCGCCGCCTCCGCGGCCT
CCGCCGACGACGAAATCAGGCCCATGACCACGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_776:549401..549985-

>Gvermi5561.t1 ID=Gvermi5561.t1|Name=Gvermi5561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=399bp|location=Sequence derived from alignment at ScGOVlb_776:549401..549985- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTCTCCACTGGCCGCGCGTCCGCTTCGTCGACCACATCGCCGC
CAAACTTGTGTATGCGTTGAAGGGTGCCACTCGACCCGGCTTCCCCTTTC
CTGGCGTAAGTATGGCAACCAAATCGACGCACATCAACCCCAAGCCTTTC
CTGCTCTCCCTCACCGGGAAGCCGGTGATTGTCAAGCTCAAATGGGGCAT
GGAATACAGAGGCTACCTCAAGTCCGTGGACAACTACATGAACATTCAAC
TCGAAAATACCGAGGAATGGGTGGATGGCGCTATGGACGGCGAGCTCGGC
GAGATTCTCATCCGCTGCAACAACGTGTTGTACATACGCCCGGGGCTCGC
CGCCTCCGCGGCCTCCGCCGACGACGAAATCAGGCCCATGACCACGTAG
back to top