Gvermi5543.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5543.t1
Unique NameGvermi5543.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Homology
BLAST of Gvermi5543.t1 vs. uniprot
Match: A0A2V3IJR3_9FLOR (U1-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR3_9FLOR)

HSP 1 Score: 181 bits (460), Expect = 3.250e-54
Identity = 114/224 (50.89%), Postives = 159/224 (70.98%), Query Frame = 0
Query:    1 MSPKTKQSRREQTQHLCKICNIWIADNKPQRDQHEAGAKHIANRQRVLREIAEQNEKKRAQERREGKRIPSQNQSRAMQQMMELAMQATQGEVKEVESTEDGKQETVIAAQQVDENGYPLPADSVFQWTTVAEEDGGTFQDGEGEEHTD----KLEQSETHRERAIGTLVSEKFKAGVKRV----QEIDETRDLVAEDAKERSLALAAFTKRKAAAGRKRRRKQ 216
            M+PK KQ R+E TQHLC+ICNIWIADNK QRDQHE+GAKHIANRQ++LR+IAE+NEK RA+ R+EG+   ++  SRA+Q++ME+A+QATQG++ E E T+  K +   + QQVDE GYP  A+S+F+W  VA+E+ G   D  G+E       +LEQS   +E  +  +++++  AGVKR       +   ++   EDA+ER+ AL++F KR  AAGRKRRRK+
Sbjct:    1 MAPKAKQRRQETTQHLCRICNIWIADNKLQRDQHESGAKHIANRQKLLRQIAEKNEKARAEARKEGR--STEGGSRAVQELMEIALQATQGKILEPEKTDIDKSDVEQSDQQVDEKGYPTAANSLFEWIAVADENDG---DTNGQEXXXXXXGRLEQSA--QEAELHHVITQQV-AGVKRTLGREPVVSSVKEEDKEDAQERTDALSSFKKRPPAAGRKRRRKR 216          
BLAST of Gvermi5543.t1 vs. uniprot
Match: R7QPY9_CHOCR (zf-U1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPY9_CHOCR)

HSP 1 Score: 70.1 bits (170), Expect = 5.110e-11
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 0
Query:    3 PKTKQSRREQTQHLCKICNIWIADNKPQRDQHEAGAKHIANRQRVLREIAEQNEKKRAQERRE-----GKRIPSQ---NQSRAMQQMMELAMQATQ-----------------GEVKEVESTEDGKQETVIAAQQVDENGYPLPADSVF-QWTTV 131
            PK   + R+    LCKICNIWIADNK QR QHE  +KH   R  +L+ IA++NE+K  +++R+     GK  P+    N +   QQ++E    A+                  G   ++++    ++   +  + +DENG+PLPA +++ QW + 
Sbjct:    2 PKKPYANRK----LCKICNIWIADNKIQRLQHEEASKHKQARAALLKSIADKNERKAKEQKRDAALAAGKTAPATGGTNAATVTQQLLEKVASASSRRAASEKSRKRPRDDSHGASSDIKTDARSQENGQLQDEALDENGFPLPASAMYGQWQSA 152          
The following BLAST results are available for this feature:
BLAST of Gvermi5543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJR3_9FLOR3.250e-5450.89U1-type domain-containing protein n=1 Tax=Gracilar... [more]
R7QPY9_CHOCR5.110e-1132.26zf-U1 domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 13..66
e-value: 8.5E-8
score: 34.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..105
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 12..47
e-value: 2.9E-6
score: 36.8
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 14..47
e-value: 7.0E-7
score: 28.9
IPR040023WW domain-binding protein 4PANTHERPTHR13173WW DOMAIN BINDING PROTEIN 4coord: 12..157
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 14..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:334426..335076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1Gvermi5543.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 334426..335076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MSPKTKQSRREQTQHLCKICNIWIADNKPQRDQHEAGAKHIANRQRVLRE
IAEQNEKKRAQERREGKRIPSQNQSRAMQQMMELAMQATQGEVKEVESTE
DGKQETVIAAQQVDENGYPLPADSVFQWTTVAEEDGGTFQDGEGEEHTDK
LEQSETHRERAIGTLVSEKFKAGVKRVQEIDETRDLVAEDAKERSLALAA
FTKRKAAAGRKRRRKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR040023WBP4
IPR036236Znf_C2H2_sf