Gvermi5543.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5543.t1
Unique NameGvermi5543.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:334426..335076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog552467.XP_003197508.1
PFAMszf-U1
Max annot lvl4751|Fungi
KEGG rclassRC00001
KEGG koko:K00354,ko:K13220
KEGG ReactionR00282
GOsGO:0000375,GO:0000377,GO:0000398,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0045292,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue1.42e-06
EggNOG OGsKOG0150@1|root,KOG0150@2759|Eukaryota,38EER@33154|Opisthokonta,3P2UA@4751|Fungi,3V21J@5204|Basidiomycota,3VFIC@5234|Tremellales
EC1.6.99.1
DescriptionU1 zinc finger
COG categoryK
BRITEko00000,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5543Gvermi5543Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 334426..335076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1.start1Gvermi5543.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 334426..334428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1.CDS1Gvermi5543.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 334426..335076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1.exon1Gvermi5543.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 334426..335076 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1.stop1Gvermi5543.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 335074..335076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5543.t1Gvermi5543.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 334426..335076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=217bp
MSPKTKQSRREQTQHLCKICNIWIADNKPQRDQHEAGAKHIANRQRVLRE
IAEQNEKKRAQERREGKRIPSQNQSRAMQQMMELAMQATQGEVKEVESTE
DGKQETVIAAQQVDENGYPLPADSVFQWTTVAEEDGGTFQDGEGEEHTDK
LEQSETHRERAIGTLVSEKFKAGVKRVQEIDETRDLVAEDAKERSLALAA
FTKRKAAAGRKRRRKQ*
back to top

spliced messenger RNA

>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_776:334426..335076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCAAAAACAAAGCAAAGTCGACGCGAGCAGACACAGCATCTGTG
CAAAATATGCAACATATGGATAGCGGACAATAAGCCCCAGCGAGATCAGC
ACGAGGCGGGAGCAAAACACATTGCGAATCGTCAACGGGTCCTGCGTGAG
ATTGCCGAGCAAAATGAAAAAAAGCGAGCCCAGGAGCGCAGGGAAGGAAA
GCGAATTCCGAGCCAGAACCAAAGCCGGGCAATGCAGCAAATGATGGAAC
TCGCAATGCAGGCAACGCAAGGAGAGGTAAAGGAAGTCGAAAGCACAGAG
GATGGCAAACAGGAAACCGTGATCGCTGCGCAACAAGTGGACGAAAATGG
ATATCCATTGCCTGCAGATTCTGTGTTTCAGTGGACCACAGTGGCTGAGG
AAGATGGCGGGACATTCCAGGATGGTGAAGGAGAAGAACATACAGACAAA
CTTGAACAATCAGAAACACACCGCGAACGAGCAATTGGGACACTTGTGAG
TGAGAAATTCAAGGCGGGCGTCAAGAGAGTACAGGAAATTGACGAGACTA
GAGACCTGGTTGCAGAAGATGCGAAAGAGCGCTCGTTAGCACTGGCGGCG
TTCACAAAGCGAAAAGCAGCTGCAGGCCGAAAGCGCCGACGAAAACAGTG
A
back to top

protein sequence of Gvermi5543.t1

>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MSPKTKQSRREQTQHLCKICNIWIADNKPQRDQHEAGAKHIANRQRVLRE
IAEQNEKKRAQERREGKRIPSQNQSRAMQQMMELAMQATQGEVKEVESTE
DGKQETVIAAQQVDENGYPLPADSVFQWTTVAEEDGGTFQDGEGEEHTDK
LEQSETHRERAIGTLVSEKFKAGVKRVQEIDETRDLVAEDAKERSLALAA
FTKRKAAAGRKRRRKQ*
back to top

mRNA from alignment at ScGOVlb_776:334426..335076+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_776:334426..335076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCACCAAAAACAAAGCAAAGTCGACGCGAGCAGACACAGCATCTGTG
CAAAATATGCAACATATGGATAGCGGACAATAAGCCCCAGCGAGATCAGC
ACGAGGCGGGAGCAAAACACATTGCGAATCGTCAACGGGTCCTGCGTGAG
ATTGCCGAGCAAAATGAAAAAAAGCGAGCCCAGGAGCGCAGGGAAGGAAA
GCGAATTCCGAGCCAGAACCAAAGCCGGGCAATGCAGCAAATGATGGAAC
TCGCAATGCAGGCAACGCAAGGAGAGGTAAAGGAAGTCGAAAGCACAGAG
GATGGCAAACAGGAAACCGTGATCGCTGCGCAACAAGTGGACGAAAATGG
ATATCCATTGCCTGCAGATTCTGTGTTTCAGTGGACCACAGTGGCTGAGG
AAGATGGCGGGACATTCCAGGATGGTGAAGGAGAAGAACATACAGACAAA
CTTGAACAATCAGAAACACACCGCGAACGAGCAATTGGGACACTTGTGAG
TGAGAAATTCAAGGCGGGCGTCAAGAGAGTACAGGAAATTGACGAGACTA
GAGACCTGGTTGCAGAAGATGCGAAAGAGCGCTCGTTAGCACTGGCGGCG
TTCACAAAGCGAAAAGCAGCTGCAGGCCGAAAGCGCCGACGAAAACAGTG
A
back to top

Coding sequence (CDS) from alignment at ScGOVlb_776:334426..335076+

>Gvermi5543.t1 ID=Gvermi5543.t1|Name=Gvermi5543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=651bp|location=Sequence derived from alignment at ScGOVlb_776:334426..335076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCACCAAAAACAAAGCAAAGTCGACGCGAGCAGACACAGCATCTGTG
CAAAATATGCAACATATGGATAGCGGACAATAAGCCCCAGCGAGATCAGC
ACGAGGCGGGAGCAAAACACATTGCGAATCGTCAACGGGTCCTGCGTGAG
ATTGCCGAGCAAAATGAAAAAAAGCGAGCCCAGGAGCGCAGGGAAGGAAA
GCGAATTCCGAGCCAGAACCAAAGCCGGGCAATGCAGCAAATGATGGAAC
TCGCAATGCAGGCAACGCAAGGAGAGGTAAAGGAAGTCGAAAGCACAGAG
GATGGCAAACAGGAAACCGTGATCGCTGCGCAACAAGTGGACGAAAATGG
ATATCCATTGCCTGCAGATTCTGTGTTTCAGTGGACCACAGTGGCTGAGG
AAGATGGCGGGACATTCCAGGATGGTGAAGGAGAAGAACATACAGACAAA
CTTGAACAATCAGAAACACACCGCGAACGAGCAATTGGGACACTTGTGAG
TGAGAAATTCAAGGCGGGCGTCAAGAGAGTACAGGAAATTGACGAGACTA
GAGACCTGGTTGCAGAAGATGCGAAAGAGCGCTCGTTAGCACTGGCGGCG
TTCACAAAGCGAAAAGCAGCTGCAGGCCGAAAGCGCCGACGAAAACAGTG
A
back to top