Gvermi5453.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5453.t1
Unique NameGvermi5453.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Homology
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A2V3IZ11_9FLOR (Translation initiation factor IF-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ11_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 6.770e-49
Identity = 90/135 (66.67%), Postives = 98/135 (72.59%), Query Frame = 0
Query:    9 AFVLSSHPLVLRARRATQPCVSPIRAPVMKVDRSGGGRRAKSAREXXXXXXXXXXXXXXXXXXXELATKIEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            AFVL+S  L      A  P +SP R P+MKVDR GGG+RAK+AR+                     ATKIEIDG VMESLPSA+FKVELDNK EILAHISG+IRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
Sbjct:   10 AFVLTSPALPTSKSHA--PSISPRRPPLMKVDRRGGGKRAKNARQNKTVQAEERESNAP-------ATKIEIDGIVMESLPSAMFKVELDNKAEILAHISGRIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 135          
BLAST of Gvermi5453.t1 vs. uniprot
Match: R7QEY7_CHOCR (Translation initiation factor IF1, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEY7_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 6.870e-31
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0
Query:   74 LATKIEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            +AT IEIDG V ESLPSAVF V+L+N   +  HISGKIRKNYI+ILVGD+V+CELSPYDLTKGRITFRYK
Sbjct:    1 MATTIEIDGIVTESLPSAVFTVQLENDAVVRGHISGKIRKNYIKILVGDKVRCELSPYDLTKGRITFRYK 70          
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A2M7A7V6_9BACT (Translation initiation factor IF-1 n=1 Tax=Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9 TaxID=1973916 RepID=A0A2M7A7V6_9BACT)

HSP 1 Score: 112 bits (280), Expect = 5.920e-30
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 0
Query:   77 KIEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            KIE++GT+MESLP+A+FKVEL N H +LAH+SGKIR N+IRIL GDRV+ ELSPYDLT+GRIT+RYK
Sbjct:    6 KIEVEGTIMESLPNAMFKVELKNGHRVLAHVSGKIRMNFIRILPGDRVQLELSPYDLTRGRITYRYK 72          
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A7V8A4G9_9BACT (Translation initiation factor IF-1 n=1 Tax=Fusobacteria bacterium TaxID=2060921 RepID=A0A7V8A4G9_9BACT)

HSP 1 Score: 112 bits (280), Expect = 5.920e-30
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++G +++SLP+A+FKVELDN H++LAHISGKIR N+IRIL GDRVK ELSPYDLTKGRIT+RYK
Sbjct:    7 IEVEGVILDSLPNAMFKVELDNGHQVLAHISGKIRVNFIRILPGDRVKLELSPYDLTKGRITYRYK 72          
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A7V2Y6Y9_9BACT (Translation initiation factor IF-1 n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y6Y9_9BACT)

HSP 1 Score: 110 bits (276), Expect = 2.400e-29
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++GTV+ESLP+A+F+VEL NKH ILAH+SGK+R N+IRIL GDRVK E+SPYDLT+GRIT+RYK
Sbjct:    7 IEVEGTVVESLPNAMFRVELKNKHRILAHVSGKMRMNFIRILPGDRVKLEMSPYDLTRGRITYRYK 72          
BLAST of Gvermi5453.t1 vs. uniprot
Match: UPI000BBBC537 (translation initiation factor IF-1 n=1 Tax=Staphylococcus intermedius TaxID=1285 RepID=UPI000BBBC537)

HSP 1 Score: 110 bits (275), Expect = 3.400e-29
Identity = 48/66 (72.73%), Postives = 62/66 (93.94%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++GTV+++LP+A+FKVEL+N HEILAH+SGKIR NYIRIL+GD+V  E+SPYDLT+GRIT+RYK
Sbjct:    7 IELEGTVLDTLPNAMFKVELENGHEILAHVSGKIRMNYIRILLGDKVTVEMSPYDLTRGRITYRYK 72          
BLAST of Gvermi5453.t1 vs. uniprot
Match: R7LVS2_9FUSO (Translation initiation factor IF-1 n=29 Tax=Bacteria TaxID=2 RepID=R7LVS2_9FUSO)

HSP 1 Score: 110 bits (274), Expect = 4.700e-29
Identity = 49/66 (74.24%), Postives = 62/66 (93.94%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++GT++ES+P+A+FKV+L+N HEILAHISGKIRKN+IRIL GDRVK E++PYDL+KGRITFR K
Sbjct:    6 IELEGTIIESMPNAMFKVKLENDHEILAHISGKIRKNFIRILPGDRVKVEMTPYDLSKGRITFRLK 71          
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A849H2H6_9BACT (Translation initiation factor IF-1 n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A849H2H6_9BACT)

HSP 1 Score: 110 bits (274), Expect = 4.700e-29
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++GTV E LP+A FKVEL+N HEILA++SGK+RK YIR+L GDRVKCE+SPYDLT+GRIT+RYK
Sbjct:    6 IEVEGTVSEVLPNATFKVELENGHEILAYLSGKMRKFYIRVLEGDRVKCEMSPYDLTRGRITYRYK 71          
BLAST of Gvermi5453.t1 vs. uniprot
Match: H3NCM4_9LACT (Translation initiation factor IF-1 n=6 Tax=Bacilli TaxID=91061 RepID=H3NCM4_9LACT)

HSP 1 Score: 110 bits (274), Expect = 4.830e-29
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++G V+E+LP+A+FKVEL+N HEILAH+SGKIR NYIRIL GD+V  E+SPYDLTKGRIT+RYK
Sbjct:    7 IEVEGVVVETLPNAMFKVELENDHEILAHVSGKIRMNYIRILPGDKVTVEMSPYDLTKGRITYRYK 72          
BLAST of Gvermi5453.t1 vs. uniprot
Match: A0A7X5W8M6_9BACT (Translation initiation factor IF-1 n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X5W8M6_9BACT)

HSP 1 Score: 109 bits (272), Expect = 9.450e-29
Identity = 48/66 (72.73%), Postives = 61/66 (92.42%), Query Frame = 0
Query:   78 IEIDGTVMESLPSAVFKVELDNKHEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 143
            IE++GTV E LP+A F+VEL+N HEILA++SGK+RK+YIR+L GDRVKCE+SPYDL+KGRIT+RYK
Sbjct:    6 IEVEGTVTEVLPNAKFRVELENGHEILAYLSGKMRKHYIRVLEGDRVKCEMSPYDLSKGRITYRYK 71          
The following BLAST results are available for this feature:
BLAST of Gvermi5453.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ11_9FLOR6.770e-4966.67Translation initiation factor IF-1, chloroplastic ... [more]
R7QEY7_CHOCR6.870e-3177.14Translation initiation factor IF1, Rhodoplastic n=... [more]
A0A2M7A7V6_9BACT5.920e-3074.63Translation initiation factor IF-1 n=1 Tax=Armatim... [more]
A0A7V8A4G9_9BACT5.920e-3075.76Translation initiation factor IF-1 n=1 Tax=Fusobac... [more]
A0A7V2Y6Y9_9BACT2.400e-2974.24Translation initiation factor IF-1 n=1 Tax=Candida... [more]
UPI000BBBC5373.400e-2972.73translation initiation factor IF-1 n=1 Tax=Staphyl... [more]
R7LVS2_9FUSO4.700e-2974.24Translation initiation factor IF-1 n=29 Tax=Bacter... [more]
A0A849H2H6_9BACT4.700e-2974.24Translation initiation factor IF-1 n=1 Tax=Gemmati... [more]
H3NCM4_9LACT4.830e-2974.24Translation initiation factor IF-1 n=6 Tax=Bacilli... [more]
A0A7X5W8M6_9BACT9.450e-2972.73Translation initiation factor IF-1 n=1 Tax=Gemmati... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 75..143
e-value: 6.3E-7
score: 39.0
NoneNo IPR availableGENE3D2.40.50.140coord: 71..143
e-value: 2.5E-34
score: 118.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..76
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 56..143
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 78..141
e-value: 2.7E-24
score: 84.7
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 70..143
score: 21.199068
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 76..142
e-value: 1.2E-33
score: 112.9
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 56..143
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 70..143
score: 24.630955
IPR004368Translation initiation factor IF-1CDDcd04451S1_IF1coord: 78..141
e-value: 6.62745E-37
score: 118.777
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 77..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2102875..2103392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1Gvermi5453.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2102875..2103392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MERQCNHQAFVLSSHPLVLRARRATQPCVSPIRAPVMKVDRSGGGRRAKS
ARENRSSSQSNSSSSSPTSSSSELATKIEIDGTVMESLPSAVFKVELDNK
HEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR006196RNA-binding_domain_S1_IF1
IPR004368TIF_IF1
IPR012340NA-bd_OB-fold