Gvermi5453.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5453.t1
Unique NameGvermi5453.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2102875..2103392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog883081.HMPREF9698_00856
Preferred nameinfA
PFAMseIF-1a
Max annot lvl91061|Bacilli
KEGG koko:K02518
GOsGO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065
Evalue2.39e-29
EggNOG OGsCOG0361@1|root,COG0361@2|Bacteria,1V9ZK@1239|Firmicutes,4HKF4@91061|Bacilli,27GMT@186828|Carnobacteriaceae
DescriptionOne of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5453Gvermi5453Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 2102875..2103392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1Gvermi5453.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 2102875..2103392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1.start1Gvermi5453.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 2102875..2102877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1.CDS1Gvermi5453.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 2102875..2103292 +
Gvermi5453.t1.CDS2Gvermi5453.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 2103379..2103392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1.exon1Gvermi5453.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 2102875..2103292 +
Gvermi5453.t1.exon2Gvermi5453.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 2103379..2103392 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1.intron1Gvermi5453.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 2103293..2103378 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5453.t1.stop1Gvermi5453.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 2103390..2103392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=144bp
MERQCNHQAFVLSSHPLVLRARRATQPCVSPIRAPVMKVDRSGGGRRAKS
ARENRSSSQSNSSSSSPTSSSSELATKIEIDGTVMESLPSAVFKVELDNK
HEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK*
back to top

spliced messenger RNA

>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp|location=Sequence derived from alignment at ScGOVlb_24228:2102875..2103392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGTCAGTGCAACCACCAAGCCTTTGTGCTCTCGTCTCACCCCCT
GGTTCTCCGCGCAAGACGCGCGACACAGCCATGTGTTTCACCCATTCGTG
CCCCTGTCATGAAGGTGGATCGGTCCGGCGGAGGAAGGCGAGCAAAGAGC
GCCAGGGAGAACAGGTCCTCTTCTCAGTCCAATtcctcctcctcctcccc
cacttcatcttcttcGGAACTGGCTACAAAGATTGAGATTGACGGAACCG
TAATGGAGAGTCTGCCGAGCGCTGTCTTCAAGGTTGAATTAGACAACAAA
CATGAGATTCTCGCACACATTTCGGGAAAGATTAGAAAGAACTACATTCG
AATTCTCGTCGGTGACCGTGTGAAATGCGAACTCTCTCCTTATGACCTCA
CAAAGGGACGGATAACATTTCGGTATAAGTAA
back to top

protein sequence of Gvermi5453.t1

>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MERQCNHQAFVLSSHPLVLRARRATQPCVSPIRAPVMKVDRSGGGRRAKS
ARENRSSSQSNSSSSSPTSSSSELATKIEIDGTVMESLPSAVFKVELDNK
HEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK*
back to top

mRNA from alignment at ScGOVlb_24228:2102875..2103392+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp|location=Sequence derived from alignment at ScGOVlb_24228:2102875..2103392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGTCAGTGCAACCACCAAGCCTTTGTGCTCTCGTCTCACCCCCT
GGTTCTCCGCGCAAGACGCGCGACACAGCCATGTGTTTCACCCATTCGTG
CCCCTGTCATGAAGGTGGATCGGTCCGGCGGAGGAAGGCGAGCAAAGAGC
GCCAGGGAGAACAGGTCCTCTTCTCAGTCCAATtcctcctcctcctcccc
cacttcatcttcttcGGAACTGGCTACAAAGATTGAGATTGACGGAACCG
TAATGGAGAGTCTGCCGAGCGCTGTCTTCAAGGTTGAATTAGACAACAAA
CATGAGATTCTCGCACACATTTCGGGAAAGATTAGAAAGAACTACATTCG
AATTCTCGTCGGTGACCGTGTGAAATGCGAACTCTCTCCTTATGACCTCA
CAAAGGGACGGATAACATGTAAGTTTATCTCTCTTGCGTTCCTACAACAC
TGACGCCTTTCGAACTTGCTTCTGACCGCGCCTCTGATTTTGTTCGCTGC
GCAGTTCGGTATAAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24228:2102875..2103392+

>Gvermi5453.t1 ID=Gvermi5453.t1|Name=Gvermi5453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=432bp|location=Sequence derived from alignment at ScGOVlb_24228:2102875..2103392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGTCAGTGCAACCACCAAGCCTTTGTGCTCTCGTCTCACCCCCT
GGTTCTCCGCGCAAGACGCGCGACACAGCCATGTGTTTCACCCATTCGTG
CCCCTGTCATGAAGGTGGATCGGTCCGGCGGAGGAAGGCGAGCAAAGAGC
GCCAGGGAGAACAGGTCCTCTTCTCAGTCCAATtcctcctcctcctcccc
cacttcatcttcttcGGAACTGGCTACAAAGATTGAGATTGACGGAACCG
TAATGGAGAGTCTGCCGAGCGCTGTCTTCAAGGTTGAATTAGACAACAAA
CATGAGATTCTCGCACACATTTCGGGAAAGATTAGAAAGAACTACATTCG
AATTCTCGTCGGTGACCGTGTGAAATGCGAACTCTCTCCTTATGACCTCA
CAAAGGGACGGATAACATTTCGGTATAAGTAA
back to top