Gvermi5278.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5278.t1
Unique NameGvermi5278.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length129
Homology
BLAST of Gvermi5278.t1 vs. uniprot
Match: R7Q8B2_CHOCR (RT_RNaseH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8B2_CHOCR)

HSP 1 Score: 78.6 bits (192), Expect = 9.810e-15
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 0
Query:   45 NVHLALWNFQIPKDAIWIEECTRYVPRSGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFFF 128
            +V  AL     P  A+W EEC RY+P          KW+  L Y+DDVIIYS++V EHF H++    LL DAG++ KL KC FF
Sbjct:   51 DVCAALRVVPFPPHAVWFEECPRYLPAGRRYYTVACKWETALVYLDDVIIYSKTVTEHFAHVREFSGLLPDAGVSLKLSKCAFF 134          
BLAST of Gvermi5278.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 68.6 bits (166), Expect = 6.010e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 0
Query:   71 RSGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFFF 128
            RS  II S+VKWK  L Y+DDVI++SR++EEHF H++ V  LL+ AG+T K  KC FF
Sbjct:  496 RSLDIILSRVKWKSCLVYLDDVIVFSRTIEEHFGHLQEVFSLLERAGITLKFSKCHFF 553          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A821XC55_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821XC55_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 3.670e-8
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 0
Query:   80 VKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
            +KW   L Y+DD+I+YS S ++H  H++LVLQ ++ +GLT K+ KC F
Sbjct:    8 LKWSCALVYLDDIIVYSTSFDDHLYHLELVLQHIQQSGLTLKIDKCHF 55          
BLAST of Gvermi5278.t1 vs. uniprot
Match: UPI00142D7D55 (uncharacterized protein LOC117131303 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D7D55)

HSP 1 Score: 59.7 bits (143), Expect = 7.440e-8
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   72 SGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
             G+I PS   W  P+ +IDD++IYSRS EEH  H+++VL+ L+D  L  KL KC F
Sbjct:  448 KGFIRPSSSPWGAPVLFIDDILIYSRSEEEHKEHLRMVLERLRDRKLFAKLSKCRF 503          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A4Y2IJI1_ARAVE (RNA-directed DNA polymerase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2IJI1_ARAVE)

HSP 1 Score: 59.7 bits (143), Expect = 7.730e-8
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 0
Query:   80 VKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
            +KWK+ L Y+DDVI+Y+ ++EEH   +++VLQ ++ AGLT   +KCFF
Sbjct:   56 MKWKHCLCYLDDVIVYAATIEEHLRRLRMVLQCIRSAGLTLNNEKCFF 103          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A816EKY2_9BILA (RNA-directed DNA polymerase n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A816EKY2_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 8.080e-8
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   47 HLALWNFQIPKDAIWIEECTRYVPRSGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
            H  L+ F++    +     T    R   ++   +KW   L Y+DD+I+YS S E+H  H++LVLQ L+++GLT K+ KC F
Sbjct:  852 HAGLFRFRVMPFGLTNAPAT--FQRLMDLVLGGLKWSCALVYLDDIIVYSSSFEDHLNHLELVLQQLQNSGLTLKINKCHF 930          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A818PVW9_9BILA (RNA-directed DNA polymerase n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A818PVW9_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 8.190e-8
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   47 HLALWNFQIPKDAIWIEECTRYVPRSGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
            H  L+ F++    +     T    R   ++   +KW   L Y+DD+I+YS S E+H  H++LVLQ L+++GLT K+ KC F
Sbjct: 1145 HAGLFRFRVMPFGLTNAPAT--FQRLMDLVLGGLKWSCALVYLDDIIVYSSSFEDHLNHLELVLQQLQNSGLTLKINKCHF 1223          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A821M5X5_9BILA (Hypothetical protein n=2 Tax=Rotaria socialis TaxID=392032 RepID=A0A821M5X5_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 9.350e-8
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   47 HLALWNFQIPKDAIWIEECTRYVPRSGYIIPSKVKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCFF 127
            H  L+ F++    +     T    R   ++   +KW   L Y+DD+I+YS S ++H  H++LVLQ ++ +GLT K+ KC F
Sbjct:   25 HAGLFRFRVMPFGLTNAPAT--FQRLMDLVLGGLKWSCALVYLDDIIVYSTSFDDHLYHLELVLQQIQQSGLTLKIDKCHF 103          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A4Y2F7G7_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F7G7_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 9.720e-8
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   80 VKWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKCF 126
            +KWK+ L Y+DDVI+Y+ + EEH   +++VLQ ++ AGLT   +KCF
Sbjct:   56 MKWKHCLCYLDDVIVYAATFEEHLRRLRMVLQCIRSAGLTLNHEKCF 102          
BLAST of Gvermi5278.t1 vs. uniprot
Match: A0A820Y3L9_9BILA (Hypothetical protein n=2 Tax=Rotaria socialis TaxID=392032 RepID=A0A820Y3L9_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.280e-7
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0
Query:   81 KWKYPLGYIDDVIIYSRSVEEHFMHMKLVLQLLKDAGLTFKLKKC 125
            +WKYPL YIDD+IIYS++ EEH +H+  +  +LKDA       KC
Sbjct:   86 RWKYPLAYIDDIIIYSKTFEEHLLHLNEICTILKDARFPLNPDKC 130          
The following BLAST results are available for this feature:
BLAST of Gvermi5278.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q8B2_CHOCR9.810e-1546.43RT_RNaseH domain-containing protein n=1 Tax=Chondr... [more]
UPI001E1D3E386.010e-1156.90uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
A0A821XC55_9BILA3.670e-847.92Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
UPI00142D7D557.440e-850.00uncharacterized protein LOC117131303 n=1 Tax=Brass... [more]
A0A4Y2IJI1_ARAVE7.730e-850.00RNA-directed DNA polymerase n=1 Tax=Araneus ventri... [more]
A0A816EKY2_9BILA8.080e-837.04RNA-directed DNA polymerase n=1 Tax=Rotaria sordid... [more]
A0A818PVW9_9BILA8.190e-837.04RNA-directed DNA polymerase n=6 Tax=Rotaria sordid... [more]
A0A821M5X5_9BILA9.350e-834.57Hypothetical protein n=2 Tax=Rotaria socialis TaxI... [more]
A0A4Y2F7G7_ARAVE9.720e-848.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A820Y3L9_9BILA1.280e-751.11Hypothetical protein n=2 Tax=Rotaria socialis TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 75..128
e-value: 7.6E-13
score: 50.4
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 83..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:904592..906138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5278.t1Gvermi5278.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 904592..906138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5278.t1 ID=Gvermi5278.t1|Name=Gvermi5278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=129bp
MFASTRFSPISSITVRAIPDTGADPNLVHVDVLPRSALASLRTDNVHLAL
WNFQIPKDAIWIEECTRYVPRSGYIIPSKVKWKYPLGYIDDVIIYSRSVE
EHFMHMKLVLQLLKDAGLTFKLKKCFFF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043128Rev_trsase/Diguanyl_cyclase
IPR043502DNA/RNA_pol_sf