Gvermi4346.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4346.t1
Unique NameGvermi4346.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Homology
BLAST of Gvermi4346.t1 vs. uniprot
Match: A0A2V3IHP0_9FLOR (Retinol dehydrogenase 12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHP0_9FLOR)

HSP 1 Score: 494 bits (1272), Expect = 8.560e-174
Identity = 247/328 (75.30%), Postives = 287/328 (87.50%), Query Frame = 0
Query:    1 MPQSTLEYLAGFVKLTLDTLSQRLVNPKTYPHPLFQSDDTYLRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQPCHMLVLNAGIMAADRSVPEAHFMVNHAAHALLSLLLLNNVAMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRVGKTIVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQVNDRDLDALNGLMGVK 328
            MPQSTL+++ G+VKLTLDTLSQ+LVNPKT+ H +F++DD YLR K AIVTGANTGIG +TAR+LA AGANV+LACRNL+KAQ AA SIRN HP+ARVE++KLDLS+L SVR FA   GK+ CHMLVLNAGIM A++S PEAHFMVNHAAHALLSLLLL NV  VHGRIVFISSLTLLISDLH +D++F+ RRY WMTAYANSKLSM+LFMRALHKRVG  +++NAVHPGEATSDVARYLGK+WMTLHKKVGKLFLLSV +SARTSVFVAGA+E +QG NLFHR+D+IV IP RLVG+ DVERLWD+TL+A +V D D+  LN LM  +
Sbjct:    1 MPQSTLQFIVGYVKLTLDTLSQQLVNPKTHAHVVFRADDEYLRGKLAIVTGANTGIGLETARMLAGAGANVVLACRNLDKAQDAAQSIRNVHPSARVEISKLDLSELDSVRAFARWVGKRACHMLVLNAGIMGAEKSNPEAHFMVNHAAHALLSLLLLRNVQRVHGRIVFISSLTLLISDLHLDDMAFNTRRYYWMTAYANSKLSMVLFMRALHKRVGHAVIVNAVHPGEATSDVARYLGKVWMTLHKKVGKLFLLSVAQSARTSVFVAGAQEAQQGCNLFHRVDQIVRIPSRLVGDEDVERLWDVTLRAARVTDEDVSVLNELMAAR 328          
BLAST of Gvermi4346.t1 vs. uniprot
Match: R7Q6R4_CHOCR (Retinol Dehydrogenase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6R4_CHOCR)

HSP 1 Score: 350 bits (899), Expect = 6.930e-117
Identity = 190/336 (56.55%), Postives = 238/336 (70.83%), Query Frame = 0
Query:    1 MPQSTLEYLAGFVKLTLDTLSQRLVNPKTYP--HPLFQSDDTYLRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQ--------PCHMLVLNAGIMAADRSVPEAHFMVNHAAHALLSLLLLNNVAMVHG---RIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRVGKT-IVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEV-RQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQVNDRDLDAL 321
            MPQST EYL G+++L  DTLSQR VN ++ P  H LF S   YLR K A+VTGANTGIGF+T+R LA AGA V+LACRN  KA+ AA +IR + P A +++  LDLS L SVR   H F  +        P H+LVLN G+M A +S PE HF VNH  HALL+LLLL N+        R+V +SSLT +ISDL + D+ F  R+YNWMTAYANSKL+M+LFM+AL +R+G   I +NAVHPGEATSDVARYLG++WM LH+ VGK FLLS  ESARTSV+VAGA+E+ +   ++FHR+   + IP RL+ E DVERLW++TL   +V   DLD L
Sbjct:    1 MPQSTAEYLGGYIRLIGDTLSQRFVN-RSPPQGHALFHSSSGYLRGKVALVTGANTGIGFETSRSLAAAGATVVLACRNRGKAEAAAQAIRLAVPDANIQIENLDLSSLSSVRDCVHTFASRTASAAAPRPLHILVLNGGVMGAPQSSPETHFFVNHVGHALLTLLLLPNLLAAQNETTRVVLVSSLTSVISDLRWNDLDFKARKYNWMTAYANSKLAMLLFMKALVRRLGSAPITVNAVHPGEATSDVARYLGRVWMWLHQNVGKFFLLSTAESARTSVYVAGAKEIGKDTGHMFHRVWHKMEIPERLLDEEDVERLWEVTLAMAEVRTEDLDML 335          
BLAST of Gvermi4346.t1 vs. uniprot
Match: UPI001C4277DA (retinol dehydrogenase 12 n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C4277DA)

HSP 1 Score: 166 bits (420), Expect = 2.440e-45
Identity = 110/282 (39.01%), Postives = 161/282 (57.09%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQP--CHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLL---LNNVAMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRV-GKTIVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQV 313
            L  KT ++TGANTGIG +TA++LA  GA VI+ACR++ K + AA SIR ++P A+VEV KLDL+D  S+R FA +F ++    H+L+ NAG+M    S      E H  VNH  H LL+ LL   L N A    RI+ +SSL      + F D+  S   YN   AY  SK++ +LF R L +R+ G  + +NAVHPG   SD+ R+     M L   V  +F+ +  E A+TS++ A AEE+      +       S+ P+   +   +RLWD++ + + +
Sbjct:   39 LDGKTVLITGANTGIGKETAQVLAVRGARVIMACRDVEKGEEAAASIRAANPKAQVEVRKLDLADTCSIRAFAQDFLREVDRLHILINNAGVMMCPYSKTTDGFEMHIGVNHLGHFLLTYLLIGLLKNSA--PARIIVVSSLAHYFGWIRFHDLH-SQGSYNGGLAYCQSKVANLLFTRELARRLQGTNVTVNAVHPGTVNSDLTRH--STLMMLFMSVFSVFIKTPSEGAQTSIYCAAAEELHSVSGKYFSDCAPASVAPQGRNDETAKRLWDVSCELLGI 315          
BLAST of Gvermi4346.t1 vs. uniprot
Match: M2XVL6_GALSU (Protochlorophyllide reductase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVL6_GALSU)

HSP 1 Score: 164 bits (415), Expect = 2.950e-44
Identity = 115/331 (34.74%), Postives = 171/331 (51.66%), Query Frame = 0
Query:    9 LAGFVKLTLDTLSQRLVNPKTYPHPLFQSDDTYLRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLN-----KAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFG--KQPCHMLVLNAGIMAADRSVPE----AHFMVNHAAHALLSLLLLNNVAMV-HGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRVGKT-IVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQG-DNLFH-RIDRIVSIPPRLVGETDVERLWDITLKAVQVNDRDLDALNGL 324
            L  ++ L  D ++ RL+  K         +   L D   ++TGAN+GIG +TARL  ++GA VILACRN       K +F A   +N    A++ V  LDL    S+R F   +   + P   L+LNAG++    S  E     HF VNH  H +L+LLL+ N+    H R+V +SSLT L+  L  +DI++ NRRY    AYA+SKL  +LFMR L KR     + + AVHPG+  + VAR+ GK    L+ KV  +FL S  E    SV+ A  +        +F   +D++V +      +   + LW  +L  +  +  +++ L  L
Sbjct:   11 LRAWLWLLFDVITSRLIQLKPV-------EQRILNDAVVVITGANSGIGKETARLFVKSGAKVILACRNSTLGYQVKEEFCA---KNKALEAKIWVLPLDLQSTASIRAFVEQWKSLQLPLDYLILNAGVLGVPLSYTEDHVEMHFGVNHLGHFMLTLLLMENLIQTKHSRVVIVSSLTYLLGSLRLDDINYKNRRYRSFEAYASSKLCNLLFMRELCKRYKSDHLSIVAVHPGDVHTQVARHFGKWIYYLYDKVASVFLRSP-EQGALSVYAAAVDPYLSSFSGIFTMNVDQLVPLAANATHDASSKYLWKKSLSLISFHPNEVEMLRSL 330          
BLAST of Gvermi4346.t1 vs. uniprot
Match: A0A8D0HE14_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HE14_SPHPU)

HSP 1 Score: 161 bits (407), Expect = 1.250e-43
Identity = 108/280 (38.57%), Postives = 161/280 (57.50%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQP--CHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLLLNNVAM-VHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRVGKTIV-LNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQV 313
            L  K  ++TG NTGIG +TA+ LA+ GA VI+ACR++ K + AA  IR      +V V KLDL+D +S+R FA NF K+    H+L+ NAG+M    S      E HF VNH  H LL+ LLL ++   V  RIV +SSL  + S ++F D+  + + YN   AY +SKL+ +LF + L +R+  T+V +NA+HPG   +D+ R+   I + L  K+   FL +  E ARTSV+ A AEE+      +    +   I P+   E    +LW ++ + + +
Sbjct:   20 LNGKVVVITGGNTGIGKETAKDLAQRGARVIIACRDMTKGETAASEIRTQTGNQQVIVKKLDLADTKSIRVFAENFLKEEKELHILINNAGVMLCPYSKTADDFEMHFGVNHLGHFLLTFLLLEHLKKSVPARIVIVSSLAHMGSRINFSDLQ-NEKFYNRNLAYGHSKLANLLFTQELARRLQGTVVTVNALHPGIVYTDLIRH--SILLKLACKMCTFFLKTPQEGARTSVYCAVAEELESVSGKYFVNCQPAYIAPQGRNEATARKLWSVSCELLGI 296          
BLAST of Gvermi4346.t1 vs. uniprot
Match: A0A8D0HA75_SPHPU (Uncharacterized protein n=2 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HA75_SPHPU)

HSP 1 Score: 161 bits (407), Expect = 8.020e-43
Identity = 108/280 (38.57%), Postives = 161/280 (57.50%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQP--CHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLLLNNVAM-VHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRVGKTIV-LNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQV 313
            L  K  ++TG NTGIG +TA+ LA+ GA VI+ACR++ K + AA  IR      +V V KLDL+D +S+R FA NF K+    H+L+ NAG+M    S      E HF VNH  H LL+ LLL ++   V  RIV +SSL  + S ++F D+  + + YN   AY +SKL+ +LF + L +R+  T+V +NA+HPG   +D+ R+   I + L  K+   FL +  E ARTSV+ A AEE+      +    +   I P+   E    +LW ++ + + +
Sbjct:   97 LNGKVVVITGGNTGIGKETAKDLAQRGARVIIACRDMTKGETAASEIRTQTGNQQVIVKKLDLADTKSIRVFAENFLKEEKELHILINNAGVMLCPYSKTADDFEMHFGVNHLGHFLLTFLLLEHLKKSVPARIVIVSSLAHMGSRINFSDLQ-NEKFYNRNLAYGHSKLANLLFTQELARRLQGTVVTVNALHPGIVYTDLIRH--SILLKLACKMCTFFLKTPQEGARTSVYCAVAEELESVSGKYFVNCQPAYIAPQGRNEATARKLWSVSCELLGI 373          
BLAST of Gvermi4346.t1 vs. uniprot
Match: UPI001B7F535C (retinol dehydrogenase 12 n=3 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7F535C)

HSP 1 Score: 157 bits (396), Expect = 8.470e-42
Identity = 110/284 (38.73%), Postives = 159/284 (55.99%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQP--CHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLLLNNVA-MVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRV-GKTIVLNAVHPGEATSDVARY---LGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDI--TLKAVQ 312
            L  KT ++TGANTGIG +TAR LA  GA VI+ACR+L+K + AA  IR    + +V V +LDL+D +S++QFA +F K+    H+L+ NAG+M    S      E  F VNH  H LL+ LLL+ +      RI+ +SSL      + F+D+  S R Y    AY  SKL+ +LF R L KR+ G  + +N++HPG   S++ R+   +G IWM         F+ + +E A+TS++ A AEE+               + P+   E   +RLWD+  TL  VQ
Sbjct:   39 LDGKTVLITGANTGIGKETARDLARRGARVIIACRDLSKGEAAASEIRAETGSKQVLVRRLDLADTRSIKQFAEDFLKEENRLHILINNAGVMMCPYSNTVDGFEMQFGVNHLGHFLLTHLLLDLLKESAPARIINVSSLAHNFGRIKFDDLQ-SERSYEGGLAYCQSKLANVLFTRELAKRLTGTRVTVNSLHPGSVKSELTRHSSLVGIIWMLF-----SFFIKTPWEGAQTSIYCAVAEELENISGKHFSDCSPAFVAPQGRNEETAKRLWDVSCTLLGVQ 316          
BLAST of Gvermi4346.t1 vs. uniprot
Match: A0A3B3QWS3_9TELE (Retinol dehydrogenase 13-like n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QWS3_9TELE)

HSP 1 Score: 157 bits (398), Expect = 9.920e-42
Identity = 107/281 (38.08%), Postives = 161/281 (57.30%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNF--GKQPCHMLVLNAGIMAADRSVPEAHF----MVNHAAHALLSLLLLNNV-AMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRV-GKTIVLNAVHPGEATSDVARYLGKIWMTLHKKV---GKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAV 311
            L  KT ++TGANTGIG +TAR LA  GA VI+ACR+L++A+ AAD IR S     V V  LDL+ L SVRQFA  +   ++   +L+ NAG+M   +S+ E  F     VNH  H LL+ LLL  + + V  R+V +SS+T     +HFEDI+F+   YN +T+Y  SKL+ ILF R L +RV G  +   ++HPG   +++ R++G     L+  +     L L +  E A+TSV+ A AE++ +    +     +    P    +    +LW+++ + V
Sbjct:   67 LHGKTVLITGANTGIGKETARDLAGRGARVIMACRDLSRAERAADEIRRSTGNRDVVVQHLDLASLSSVRQFAKRYTRSEERLDVLINNAGVMMCPKSLTEDGFETQLAVNHLGHFLLTTLLLEKLKSCVPSRVVTVSSMTHKGGKIHFEDINFNETPYNPLTSYRQSKLANILFARELARRVKGSGVSSFSLHPGVIRTELGRHVGSRRPLLYCLLYLPAVLLLKTPREGAQTSVYCAVAEDLEKKSGCYFSDCTVKEPAPEGKDDLVALKLWELSTQLV 347          
BLAST of Gvermi4346.t1 vs. uniprot
Match: A0A674ITR9_TERCA (Retinol dehydrogenase 12-like n=20 Tax=Testudines TaxID=8459 RepID=A0A674ITR9_TERCA)

HSP 1 Score: 156 bits (395), Expect = 1.250e-41
Identity = 106/282 (37.59%), Postives = 158/282 (56.03%), Query Frame = 0
Query:   40 TYLRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNF--GKQPCHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLLLNNVAM-VHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRV-GKTIVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQV 313
            T L  K  ++TGANTGIG +TAR LA+ GA VI+ACR++ K + AA  IR      +V V KLDL+D +S+R+FA NF   ++  H+L+ NAG+M    S      E H  VNH  H LL+ LLL  +      RIV +SSL      + F D+    + YNW  AY +SKL+ +LF R L +R+ G  +  N++HPG   S++ R+   I M+L  K    FL +  E A+TSV+ A AEE+      +    R   + P+   +   ++LW+++ + + +
Sbjct:   39 TKLNGKVVMITGANTGIGKETARDLAQRGARVIIACRDMAKGEAAACEIRAETGNQQVIVKKLDLADTKSIREFAENFLAEEKELHILINNAGVMLCPYSKTADGFEMHLGVNHLGHFLLTFLLLECLKQSAPARIVNVSSLAHHGGRIRFHDLQ-GEKCYNWGLAYCHSKLANVLFTRELARRLQGTGVTANSLHPGSVYSELVRH--SILMSLLWKTFSFFLKTPREGAQTSVYCAVAEELESVTGQYFSDCRPAYVSPQGRSDELAKKLWNVSCELLGI 317          
BLAST of Gvermi4346.t1 vs. uniprot
Match: UPI0014725FA2 (retinol dehydrogenase 12 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014725FA2)

HSP 1 Score: 156 bits (394), Expect = 1.670e-41
Identity = 108/280 (38.57%), Postives = 155/280 (55.36%), Query Frame = 0
Query:   42 LRDKTAIVTGANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVAKLDLSDLQSVRQFAHNFGKQ--PCHMLVLNAGIMAADRSVP----EAHFMVNHAAHALLSLLLLNNVAM-VHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYANSKLSMILFMRALHKRV-GKTIVLNAVHPGEATSDVARYLGKIWMTLHKKVGKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDVERLWDITLKAVQV 313
            L  KT ++TGANTGIG +TA  LA  GA VI+ACRN+ K + AA SI   +P A+VEV +LDL+D  S++ FA  F ++    H+L+ NAG+M    +      E H  VNH  H LL+ LL+  +   V  RIV +SSL      + F D+  S+  YN   AY  SKL+ +LF R L +R+ G  + +N+VHPG   SD+ R+     M L   V  +FL +  E A+TS++ A AEE++              + P+   E    RLWDI+ + + +
Sbjct:   39 LDGKTVLITGANTGIGKETALELAVRGARVIMACRNVEKGEEAAASICAVYPKAQVEVRELDLADTHSIQTFAQRFLREVNQLHILINNAGVMMCPYTKTADGFEMHMGVNHLGHFLLTYLLIGLLKRSVPARIVVLSSLAHNFGWIRFHDLH-SHGSYNSGLAYCQSKLANVLFTRELARRLKGSNVTVNSVHPGTVNSDLTRH--STLMMLLFTVFSIFLKTPQEGAQTSIYCAVAEELQSVSGKHFSDCTPAFVAPQGRSEETARRLWDISCEVLSI 315          
The following BLAST results are available for this feature:
BLAST of Gvermi4346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHP0_9FLOR8.560e-17475.30Retinol dehydrogenase 12 n=1 Tax=Gracilariopsis ch... [more]
R7Q6R4_CHOCR6.930e-11756.55Retinol Dehydrogenase n=1 Tax=Chondrus crispus Tax... [more]
UPI001C4277DA2.440e-4539.01retinol dehydrogenase 12 n=1 Tax=Solea senegalensi... [more]
M2XVL6_GALSU2.950e-4434.74Protochlorophyllide reductase n=1 Tax=Galdieria su... [more]
A0A8D0HE14_SPHPU1.250e-4338.57Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
A0A8D0HA75_SPHPU8.020e-4338.57Uncharacterized protein n=2 Tax=Sphenodon punctatu... [more]
UPI001B7F535C8.470e-4238.73retinol dehydrogenase 12 n=3 Tax=Acipenseroidei Ta... [more]
A0A3B3QWS3_9TELE9.920e-4238.08Retinol dehydrogenase 13-like n=3 Tax=Paramormyrop... [more]
A0A674ITR9_TERCA1.250e-4137.59Retinol dehydrogenase 12-like n=20 Tax=Testudines ... [more]
UPI0014725FA21.670e-4138.57retinol dehydrogenase 12 n=1 Tax=Thalassophryne am... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 160..176
score: 27.29
coord: 219..236
score: 29.19
coord: 46..63
score: 44.75
coord: 120..131
score: 39.26
coord: 199..218
score: 24.11
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 45..237
e-value: 7.3E-23
score: 81.0
NoneNo IPR availableGENE3D3.40.50.720coord: 36..315
e-value: 9.6E-59
score: 200.8
NoneNo IPR availablePANTHERPTHR24320RETINOL DEHYDROGENASEcoord: 38..309
NoneNo IPR availablePANTHERPTHR24320:SF225SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDRcoord: 38..309
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 186..214
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 42..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1295730..1296737 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4346.t1Gvermi4346.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1295730..1296737 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MPQSTLEYLAGFVKLTLDTLSQRLVNPKTYPHPLFQSDDTYLRDKTAIVT
GANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVA
KLDLSDLQSVRQFAHNFGKQPCHMLVLNAGIMAADRSVPEAHFMVNHAAH
ALLSLLLLNNVAMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYA
NSKLSMILFMRALHKRVGKTIVLNAVHPGEATSDVARYLGKIWMTLHKKV
GKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDV
ERLWDITLKAVQVNDRDLDALNGLMGVKHQSEDKT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR036291NAD(P)-bd_dom_sf