Gvermi4346.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi4346.t1
Unique Name	Gvermi4346.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_147	contig	ScGOVlb_147:1295730..1296737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8932.XP_005502493.1
Preferred name	RDH12
PFAMs	adh_short
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00649
KEGG ko	ko:K11152,ko:K11153
KEGG Reaction	R08379,R08380,R08383
KEGG Pathway	ko00830,ko01100,map00830,map01100
GOs	GO:0001523,GO:0001894,GO:0001895,GO:0001917,GO:0003008,GO:0003674,GO:0003824,GO:0004033,GO:0004745,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006081,GO:0006629,GO:0006720,GO:0006721,GO:0007154,GO:0007165,GO:0007186,GO:0007600,GO:0007601,GO:0007602,GO:0007603,GO:0008106,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009628,GO:0009642,GO:0009966,GO:0009987,GO:0010646,GO:0010817,GO:0012505,GO:0016020,GO:0016056,GO:0016062,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0023051,GO:0023052,GO:0023058,GO:0031984,GO:0032501,GO:0034308,GO:0034754,GO:0036367,GO:0042175,GO:0042445,GO:0042572,GO:0042574,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045494,GO:0048583,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051606,GO:0051716,GO:0052650,GO:0055114,GO:0060249,GO:0060342,GO:0065007,GO:0065008,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071944,GO:0097458,GO:0098590,GO:0098827,GO:0104004,GO:1901615
Evalue	1.03e-42
EggNOG OGs	COG1028@1\|root,KOG1208@2759\|Eukaryota,38CZD@33154\|Opisthokonta,3BACQ@33208\|Metazoa,3CSEJ@33213\|Bilateria,4883Z@7711\|Chordata,4917U@7742\|Vertebrata,4GQU8@8782\|Aves
EC	1.1.1.300
Description	retinol dehydrogenase
COG category	Q
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi4346	Gvermi4346	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_147 1295730..1296737 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4346.t1.start1	Gvermi4346.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_147 1295730..1295732 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4346.t1.CDS1	Gvermi4346.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_147 1295730..1296737 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4346.t1.exon1	Gvermi4346.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_147 1295730..1296737 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4346.t1.stop1	Gvermi4346.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_147 1296735..1296737 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi4346.t1	Gvermi4346.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_147 1295730..1296737 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_147:1295730..1296737+
coding sequence from alignment at ScGOVlb_147:1295730..1296737+

mRNA sequence

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MPQSTLEYLAGFVKLTLDTLSQRLVNPKTYPHPLFQSDDTYLRDKTAIVT
GANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVA
KLDLSDLQSVRQFAHNFGKQPCHMLVLNAGIMAADRSVPEAHFMVNHAAH
ALLSLLLLNNVAMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYA
NSKLSMILFMRALHKRVGKTIVLNAVHPGEATSDVARYLGKIWMTLHKKV
GKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDV
ERLWDITLKAVQVNDRDLDALNGLMGVKHQSEDKT*

spliced messenger RNA

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_147:1295730..1296737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAAAGCACTCTGGAATATCTGGCCGGCTTCGTAAAGCTAACACT
AGATACACTTTCTCAGCGACTGGTCAATCCAAAGACATACCCGCACCCCC
TCTTTCAATCCGATGACACCTACCTCCGAGACAAAACTGCCATTGTCACT
GGCGCAAACACTGGAATTGGTTTCCAAACCGCTCGCTTGCTAGCGGAAGC
AGGCGCAAATGTAATCCTCGCCTGCAGAAATCTAAACAAAGCTCAGTTCG
CGGCAGACAGTATTCGAAACTCGCATCCAACCGCTCGTGTGGAAGTTGCT
AAACTTGACCTTTCTGATTTACAATCAGTGCGACAGTTTGCCCATAATTT
TGGCAAACAGCCATGTCATATGCTTGTTCTTAACGCTGGTATTATGGCTG
CAGATCGATCTGTTCCTGAAGCGCATTTCATGGTGAATCATGCGGCGCAT
GCGTTGTTATCGTTGTTGCTATTGAATAACGTGGCCATGGTTCACGGCCG
CATTGTTTTCATATCGAGTCTCACCCTGTTGATTTCCGATCTTCATTTTG
AGGATATCAGCTTTTCGAATCGACGATACAATTGGATGACAGCATATGCC
AACAGCAAGTTAAGTATGATATTGTTCATGCGCGCTCTCCATAAACGAGT
GGGAAAAACCATCGTGTTGAATGCCGTACATCCGGGAGAGGCTACTTCCG
ATGTTGCAAGATATCTTGGCAAGATTTGGATGACGCTGCACAAAAAAGTC
GGCAAGCTGTTTTTACTTTCCGTGTTTGAATCAGCTCGGACGTCTGTGTT
CGTTGCCGGCGCAGAGGAAGTTCGACAAGGTGATAATCTGTTTCATCGCA
TCGACCGAATTGTCAGCATCCCGCCACGTCTCGTCGGTGAGACTGACGTA
GAACGCTTATGGGACATCACTTTAAAAGCTGTTCAGGTGAACGACCGTGA
TCTTGATGCTTTAAATGGATTGATGGGCGTTAAACACCAAAGTGAGGATA
AGACTTGA

protein sequence of Gvermi4346.t1

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MPQSTLEYLAGFVKLTLDTLSQRLVNPKTYPHPLFQSDDTYLRDKTAIVT
GANTGIGFQTARLLAEAGANVILACRNLNKAQFAADSIRNSHPTARVEVA
KLDLSDLQSVRQFAHNFGKQPCHMLVLNAGIMAADRSVPEAHFMVNHAAH
ALLSLLLLNNVAMVHGRIVFISSLTLLISDLHFEDISFSNRRYNWMTAYA
NSKLSMILFMRALHKRVGKTIVLNAVHPGEATSDVARYLGKIWMTLHKKV
GKLFLLSVFESARTSVFVAGAEEVRQGDNLFHRIDRIVSIPPRLVGETDV
ERLWDITLKAVQVNDRDLDALNGLMGVKHQSEDKT*

mRNA from alignment at ScGOVlb_147:1295730..1296737+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_147:1295730..1296737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACAAAGCACTCTGGAATATCTGGCCGGCTTCGTAAAGCTAACACT
AGATACACTTTCTCAGCGACTGGTCAATCCAAAGACATACCCGCACCCCC
TCTTTCAATCCGATGACACCTACCTCCGAGACAAAACTGCCATTGTCACT
GGCGCAAACACTGGAATTGGTTTCCAAACCGCTCGCTTGCTAGCGGAAGC
AGGCGCAAATGTAATCCTCGCCTGCAGAAATCTAAACAAAGCTCAGTTCG
CGGCAGACAGTATTCGAAACTCGCATCCAACCGCTCGTGTGGAAGTTGCT
AAACTTGACCTTTCTGATTTACAATCAGTGCGACAGTTTGCCCATAATTT
TGGCAAACAGCCATGTCATATGCTTGTTCTTAACGCTGGTATTATGGCTG
CAGATCGATCTGTTCCTGAAGCGCATTTCATGGTGAATCATGCGGCGCAT
GCGTTGTTATCGTTGTTGCTATTGAATAACGTGGCCATGGTTCACGGCCG
CATTGTTTTCATATCGAGTCTCACCCTGTTGATTTCCGATCTTCATTTTG
AGGATATCAGCTTTTCGAATCGACGATACAATTGGATGACAGCATATGCC
AACAGCAAGTTAAGTATGATATTGTTCATGCGCGCTCTCCATAAACGAGT
GGGAAAAACCATCGTGTTGAATGCCGTACATCCGGGAGAGGCTACTTCCG
ATGTTGCAAGATATCTTGGCAAGATTTGGATGACGCTGCACAAAAAAGTC
GGCAAGCTGTTTTTACTTTCCGTGTTTGAATCAGCTCGGACGTCTGTGTT
CGTTGCCGGCGCAGAGGAAGTTCGACAAGGTGATAATCTGTTTCATCGCA
TCGACCGAATTGTCAGCATCCCGCCACGTCTCGTCGGTGAGACTGACGTA
GAACGCTTATGGGACATCACTTTAAAAGCTGTTCAGGTGAACGACCGTGA
TCTTGATGCTTTAAATGGATTGATGGGCGTTAAACACCAAAGTGAGGATA
AGACTTGA

Coding sequence (CDS) from alignment at ScGOVlb_147:1295730..1296737+

>Gvermi4346.t1 ID=Gvermi4346.t1|Name=Gvermi4346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_147:1295730..1296737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACAAAGCACTCTGGAATATCTGGCCGGCTTCGTAAAGCTAACACT
AGATACACTTTCTCAGCGACTGGTCAATCCAAAGACATACCCGCACCCCC
TCTTTCAATCCGATGACACCTACCTCCGAGACAAAACTGCCATTGTCACT
GGCGCAAACACTGGAATTGGTTTCCAAACCGCTCGCTTGCTAGCGGAAGC
AGGCGCAAATGTAATCCTCGCCTGCAGAAATCTAAACAAAGCTCAGTTCG
CGGCAGACAGTATTCGAAACTCGCATCCAACCGCTCGTGTGGAAGTTGCT
AAACTTGACCTTTCTGATTTACAATCAGTGCGACAGTTTGCCCATAATTT
TGGCAAACAGCCATGTCATATGCTTGTTCTTAACGCTGGTATTATGGCTG
CAGATCGATCTGTTCCTGAAGCGCATTTCATGGTGAATCATGCGGCGCAT
GCGTTGTTATCGTTGTTGCTATTGAATAACGTGGCCATGGTTCACGGCCG
CATTGTTTTCATATCGAGTCTCACCCTGTTGATTTCCGATCTTCATTTTG
AGGATATCAGCTTTTCGAATCGACGATACAATTGGATGACAGCATATGCC
AACAGCAAGTTAAGTATGATATTGTTCATGCGCGCTCTCCATAAACGAGT
GGGAAAAACCATCGTGTTGAATGCCGTACATCCGGGAGAGGCTACTTCCG
ATGTTGCAAGATATCTTGGCAAGATTTGGATGACGCTGCACAAAAAAGTC
GGCAAGCTGTTTTTACTTTCCGTGTTTGAATCAGCTCGGACGTCTGTGTT
CGTTGCCGGCGCAGAGGAAGTTCGACAAGGTGATAATCTGTTTCATCGCA
TCGACCGAATTGTCAGCATCCCGCCACGTCTCGTCGGTGAGACTGACGTA
GAACGCTTATGGGACATCACTTTAAAAGCTGTTCAGGTGAACGACCGTGA
TCTTGATGCTTTAAATGGATTGATGGGCGTTAAACACCAAAGTGAGGATA
AGACTTGA