Gvermi13685.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi13685.t1
Unique Name	Gvermi13685.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	163

Homology

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BLAST of Gvermi13685.t1 vs. uniprot
Match: M5DCT3_CHOCR (Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=M5DCT3_CHOCR)

HSP 1 Score: 315 bits (807), Expect = 7.340e-108
Identity = 157/162 (96.91%), Postives = 161/162 (99.38%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAF+SVEYIMT+VNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGG+IVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   54 MTFYYRPTVTEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A1C9C7S6_RHOPU (Cytochrome b6 n=80 Tax=Eukaryota TaxID=2759 RepID=A0A1C9C7S6_RHOPU)

HSP 1 Score: 310 bits (795), Expect = 4.950e-106
Identity = 153/162 (94.44%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAF SVEYIMT+VNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV+L VLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGG+IVELLRG VSVGQ TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   54 MTFYYRPTVTEAFASVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHIFRVYLTGGFKKPRELTWVTGVVLGVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGGVSVGQGTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

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BLAST of Gvermi13685.t1 vs. uniprot
Match: CYB6_PORPU (Cytochrome b6 n=115 Tax=Eukaryota TaxID=2759 RepID=CYB6_PORPU)

HSP 1 Score: 309 bits (792), Expect = 1.420e-105
Identity = 153/162 (94.44%), Postives = 158/162 (97.53%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTVAEAFTSVEYIMT+VNFGWLIRSIHRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVIL VLTVSFGVTGYSLPWDQIGYWAVKIVTGVP+A+PVVG +IVELLRG VSVGQ TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   54 MTFYYRPTVAEAFTSVEYIMTDVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAVPVVGESIVELLRGGVSVGQGTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A6BM18_GNEPA (Cytochrome b6 n=1 Tax=Gnetum parvifolium TaxID=33153 RepID=A6BM18_GNEPA)

HSP 1 Score: 310 bits (793), Expect = 1.620e-105
Identity = 152/162 (93.83%), Postives = 158/162 (97.53%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAFTSV+YIM EVNFGWLIRSIHRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQ+GYWAVKIVTGVPEAIPV+G T+VELLRGS SVGQSTLTRFYSLHTF+LPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   68 MTFYYRPTVTEAFTSVQYIMGEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPVIGSTLVELLRGSFSVGQSTLTRFYSLHTFILPLLTAVFMLMHFLMIRKQGISGPL 229

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A0A0UTX8_9BRYO (Cytochrome b6 n=30 Tax=Embryophyta TaxID=3193 RepID=A0A0A0UTX8_9BRYO)

HSP 1 Score: 306 bits (784), Expect = 3.740e-105
Identity = 149/162 (91.98%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAF SV+YIMTEVNFGWLIRS+HRWSASMMVLM+ILH+FRVYLTGGFKKPRELTW+TGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVP+AIPV+G  +VE LRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:    1 MTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWITGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVESLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162

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BLAST of Gvermi13685.t1 vs. uniprot
Match: CYB6_NEPOL (Cytochrome b6 n=22 Tax=Eukaryota TaxID=2759 RepID=CYB6_NEPOL)

HSP 1 Score: 308 bits (788), Expect = 5.760e-105
Identity = 151/162 (93.21%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAF SVEYIMT VNFGWLIRSIHRWSASMMV+MLILHVFRVYLTGGFKKPRELTWVTGVILAV+TVSFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPV+G  +VELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   54 MTFYYRPTVTEAFASVEYIMTNVNFGWLIRSIHRWSASMMVMMLILHVFRVYLTGGFKKPRELTWVTGVILAVITVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGAPLVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A386JM63_9CHLO (Cytochrome b6 n=3 Tax=Dasycladaceae TaxID=3135 RepID=A0A386JM63_9CHLO)

HSP 1 Score: 307 bits (787), Expect = 7.640e-105
Identity = 151/162 (93.21%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTVAEAF SVEYIMTEVNFGWLIRSIHRW ASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVI+AV TVSFGVTGYSLPWDQIGYWAVKIVTGVP+AIPV+G T+VELLRGSV VGQ+TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   52 MTFYYRPTVAEAFASVEYIMTEVNFGWLIRSIHRWCASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVIMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSTLVELLRGSVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 213

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A0C5APY6_CANSA (Cytochrome b6 n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A0C5APY6_CANSA)

HSP 1 Score: 306 bits (785), Expect = 2.970e-104
Identity = 149/162 (91.98%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTVAEAFTSV+YIMTEVNFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFK+PRELTWVTGV+L VLT SFGVTGYSLPWDQIGYWAVKIVTGVP+AIPV+G  +VELLRGS SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   71 MTFYYRPTVAEAFTSVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 232

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A2H4NSR7_9LAMI (Cytochrome b6 n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A2H4NSR7_9LAMI)

HSP 1 Score: 303 bits (777), Expect = 4.370e-104
Identity = 147/162 (90.74%), Postives = 154/162 (95.06%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV EAF SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILH+FRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G  +VELLRGS SVGQSTLTRFYSLHTFVLPLLT VFMLMHFLMIRKQGISGPL
Sbjct:    1 MTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTVVFMLMHFLMIRKQGISGPL 162

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BLAST of Gvermi13685.t1 vs. uniprot
Match: A0A7T0CRJ5_9ERIC (Cytochrome b6 n=1 Tax=Actinidia latifolia TaxID=165711 RepID=A0A7T0CRJ5_9ERIC)

HSP 1 Score: 303 bits (777), Expect = 4.840e-104
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 0

Query:    1 MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 162
            MTFYYRPTV+EAFTSV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV+L VLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G  +VELLRGS SVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:    4 MTFYYRPTVSEAFTSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 165

The following BLAST results are available for this feature:

BLAST of Gvermi13685.t1 vs. uniprot

BLAST of Gvermi13685.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
M5DCT3_CHOCR	7.340e-108	96.91	Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=...	[more]
A0A1C9C7S6_RHOPU	4.950e-106	94.44	Cytochrome b6 n=80 Tax=Eukaryota TaxID=2759 RepID=...	[more]
CYB6_PORPU	1.420e-105	94.44	Cytochrome b6 n=115 Tax=Eukaryota TaxID=2759 RepID...	[more]
A6BM18_GNEPA	1.620e-105	93.83	Cytochrome b6 n=1 Tax=Gnetum parvifolium TaxID=331...	[more]
A0A0A0UTX8_9BRYO	3.740e-105	91.98	Cytochrome b6 n=30 Tax=Embryophyta TaxID=3193 RepI...	[more]
CYB6_NEPOL	5.760e-105	93.21	Cytochrome b6 n=22 Tax=Eukaryota TaxID=2759 RepID=...	[more]
A0A386JM63_9CHLO	7.640e-105	93.21	Cytochrome b6 n=3 Tax=Dasycladaceae TaxID=3135 Rep...	[more]
A0A0C5APY6_CANSA	2.970e-104	91.98	Cytochrome b6 n=3 Tax=Cannabis sativa TaxID=3483 R...	[more]
A0A2H4NSR7_9LAMI	4.370e-104	90.74	Cytochrome b6 n=2 Tax=Pentapetalae TaxID=1437201 R...	[more]
A0A7T0CRJ5_9ERIC	4.840e-104	91.36	Cytochrome b6 n=1 Tax=Actinidia latifolia TaxID=16...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027387	Cytochrome b/b6-like domain superfamily	GENE3D	1.20.810.10	Cytochrome Bc1 Complex; Chain C	coord: 1..162 e-value: 4.6E-74 score: 251.2
IPR005797	Cytochrome b/b6, N-terminal	PFAM	PF00033	Cytochrome_B	coord: 1..157 e-value: 6.9E-73 score: 244.5
IPR005797	Cytochrome b/b6, N-terminal	PROSITE	PS51002	CYTB_NTER	coord: 1..162 score: 31.834476
IPR005797	Cytochrome b/b6, N-terminal	CDD	cd00284	Cytochrome_b_N	coord: 1..159 e-value: 4.67488E-74 score: 218.391
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 1..162
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..53
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 54..64
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 86..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 131..153
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 154..162
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..85
None	No IPR available	TMHMM	TMhelix		coord: 31..53
None	No IPR available	TMHMM	TMhelix		coord: 131..153
None	No IPR available	TMHMM	TMhelix		coord: 65..87
IPR023530	Cytochrome b6, PetB	PANTHER	PTHR19271:SF20	SUBFAMILY NOT NAMED	coord: 1..162
IPR016174	Di-haem cytochrome, transmembrane	SUPERFAMILY	81342	Transmembrane di-heme cytochromes	coord: 1..161

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:138472..138960 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13685.t1	Gvermi13685.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_59 138472..138960 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFR
VYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTG
VPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHF
LMIRKQGISGPL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027387	Cytb/b6-like_sf
IPR005797	Cyt_b/b6_N
IPR023530	Cyt_B6_PetB
IPR016174	Di-haem_cyt_TM