Gvermi13685.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13685.t1
Unique NameGvermi13685.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:138472..138960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S27_267V6.1
Preferred namepetB
PFAMsCytochrom_B_C,Cytochrome_B
Max annot lvl35493|Streptophyta
KEGG koko:K02635,ko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161,M00162
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue4.6e-106
EggNOG OGsCOG1290@1|root,KOG4663@2759|Eukaryota,37QS7@33090|Viridiplantae,3GHBB@35493|Streptophyta
Descriptioncytochrome b6
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13685Gvermi13685Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 138472..138960 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13685.t1.stop1Gvermi13685.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 138472..138474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13685.t1.CDS1Gvermi13685.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 138472..138960 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13685.t1.exon1Gvermi13685.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 138472..138960 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13685.t1.start1Gvermi13685.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 138958..138960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13685.t1Gvermi13685.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 138472..138960 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=163bp
MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFR
VYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTG
VPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHF
LMIRKQGISGPL*
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spliced messenger RNA

>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp|location=Sequence derived from alignment at ScGOVlb_59:138472..138960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCTACTATAGACCGACTGTAGCAGAAGCATTTACTTCTGTAGA
ATATATCATGACGGAAGTAAATTTTGGTTGGTTAATTAGATCAATACATA
GATGGTCAGCAAGTATGATGGTACTAATGCTTATCTTACACGTATTCAGA
GTTTATTTAACAGGGGGCTTTAAAAAACCAAGAGAATTAACTTGGGTAAC
AGGTGTTATTTTAGCAGTTCTGACAGTATCATTTGGTGTTACTGGATACT
CACTACCTTGGGATCAAATAGGATACTGGGCAGTGAAAATCGTAACAGGT
GTGCCAGAAGCTATTCCTGTTGTAGGTGGAACAATTGTAGAACTTTTAAG
AGGAAGTGTAAGTGTGGGGCAAAGTACACTAACAAGATTTTATAGCCTTC
ATACATTTGTATTACCATTACTAACAGCTGTTTTTATGCTAATGCATTTC
TTGATGATACGTAAGCAAGGAATTTCAGGACCATTATAA
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protein sequence of Gvermi13685.t1

>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MTFYYRPTVAEAFTSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFR
VYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTG
VPEAIPVVGGTIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHF
LMIRKQGISGPL*
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mRNA from alignment at ScGOVlb_59:138472..138960-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp|location=Sequence derived from alignment at ScGOVlb_59:138472..138960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTCTACTATAGACCGACTGTAGCAGAAGCATTTACTTCTGTAGA
ATATATCATGACGGAAGTAAATTTTGGTTGGTTAATTAGATCAATACATA
GATGGTCAGCAAGTATGATGGTACTAATGCTTATCTTACACGTATTCAGA
GTTTATTTAACAGGGGGCTTTAAAAAACCAAGAGAATTAACTTGGGTAAC
AGGTGTTATTTTAGCAGTTCTGACAGTATCATTTGGTGTTACTGGATACT
CACTACCTTGGGATCAAATAGGATACTGGGCAGTGAAAATCGTAACAGGT
GTGCCAGAAGCTATTCCTGTTGTAGGTGGAACAATTGTAGAACTTTTAAG
AGGAAGTGTAAGTGTGGGGCAAAGTACACTAACAAGATTTTATAGCCTTC
ATACATTTGTATTACCATTACTAACAGCTGTTTTTATGCTAATGCATTTC
TTGATGATACGTAAGCAAGGAATTTCAGGACCATTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:138472..138960-

>Gvermi13685.t1 ID=Gvermi13685.t1|Name=Gvermi13685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=489bp|location=Sequence derived from alignment at ScGOVlb_59:138472..138960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTCTACTATAGACCGACTGTAGCAGAAGCATTTACTTCTGTAGA
ATATATCATGACGGAAGTAAATTTTGGTTGGTTAATTAGATCAATACATA
GATGGTCAGCAAGTATGATGGTACTAATGCTTATCTTACACGTATTCAGA
GTTTATTTAACAGGGGGCTTTAAAAAACCAAGAGAATTAACTTGGGTAAC
AGGTGTTATTTTAGCAGTTCTGACAGTATCATTTGGTGTTACTGGATACT
CACTACCTTGGGATCAAATAGGATACTGGGCAGTGAAAATCGTAACAGGT
GTGCCAGAAGCTATTCCTGTTGTAGGTGGAACAATTGTAGAACTTTTAAG
AGGAAGTGTAAGTGTGGGGCAAAGTACACTAACAAGATTTTATAGCCTTC
ATACATTTGTATTACCATTACTAACAGCTGTTTTTATGCTAATGCATTTC
TTGATGATACGTAAGCAAGGAATTTCAGGACCATTATAA
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