Gvermi13633.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi13633.t1
Unique NameGvermi13633.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Homology
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BLAST of Gvermi13633.t1 vs. uniprot
Match: A0A2V3IZN9_9FLOR (THO complex subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZN9_9FLOR)

HSP 1 Score: 210 bits (535), Expect = 4.010e-63
Identity = 97/158 (61.39%), Postives = 127/158 (80.38%), Query Frame = 0 
Query:    1 MKFRVLALLDKDEGNRLKHFVQALLQRERVWLRWK-RSNYSHLETGVVKSPTLFKKRTVLWHQKNKKGGFNSWLQRIESLETTPENGDLCSALWDRSPVPGVKELRQALQEDQDDPDVDEGSKRKNDEKFKWRALRALMDEDVGVLRQLSHSTRLNLD 157
            +K RV+ALL+KD+G RLKHF+Q+ LQRERVW+RWK R+NY HL+TG V SP++FK+R V+WHQKNK  G NSW+QRI++LE+ P+ GDL SAL++R PVPG+ EL+++LQED D+  ++   KRKND  FKWRALR LMDEDV  L++LS S   +LD
Sbjct:  317 LKARVIALLEKDDGGRLKHFIQSSLQRERVWIRWKKRTNYGHLKTGKVNSPSVFKRRIVMWHQKNKTNGINSWMQRIKTLESQPQKGDLYSALYERMPVPGINELKKSLQEDVDEKGLEPELKRKNDRNFKWRALRTLMDEDVAALKKLSESPNFDLD 474
[Close]
BLAST of Gvermi13633.t1 vs. uniprot
Match: A0A2V3J2I5_9FLOR (THO complex subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2I5_9FLOR)

HSP 1 Score: 150 bits (378), Expect = 4.610e-40
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 0 
Query:    1 MKFRVLALLDKDEGNRLKHFVQALLQRERVWLRWKR-SNYSHLETGVVKSPTLFKKRTVLWHQKNKKGGFNSWLQRIESLETTPENGDLCSALWDRSPVPGVKELRQALQEDQDDPDVDEGSKRKNDEKFKWRALRALMDEDVGVLRQLSHSTRLNLDNV 159
            +K RV+ALL + +G  L +F+Q+LLQRERVW+RWK+ SNYS+++T  V   ++FKKRTVLWHQ++       WL+RIE+LE + ++ D+  A++DR P PG+KEL+ A   D       E S+ K+   F WRALR LMDEDVG L++LS S   +L+ +
Sbjct:  317 LKSRVMALLKRYDGWDLFYFLQSLLQRERVWVRWKKTSNYSNIKTATVSPSSIFKKRTVLWHQQHTSSSRKEWLKRIEALEGSSKDDDIFKAVYDRGPSPGLKELKLATHGD----GAVEDSESKDGRNFNWRALRTLMDEDVGALKKLSSSPDHDLNTI 472
The following BLAST results are available for this feature:
BLAST of Gvermi13633.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZN9_9FLOR4.010e-6361.39THO complex subunit 1 n=1 Tax=Gracilariopsis chord... [more]
A0A2V3J2I5_9FLOR4.610e-4048.13THO complex subunit 1 n=1 Tax=Gracilariopsis chord... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021861THO complex, subunit THOC1PFAMPF11957efThoc1coord: 11..155
e-value: 5.6E-11
score: 41.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6861contigScGOVlb_6861:111..602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1Gvermi13633.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_6861 111..602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MKFRVLALLDKDEGNRLKHFVQALLQRERVWLRWKRSNYSHLETGVVKSP
TLFKKRTVLWHQKNKKGGFNSWLQRIESLETTPENGDLCSALWDRSPVPG
VKELRQALQEDQDDPDVDEGSKRKNDEKFKWRALRALMDEDVGVLRQLSH
STRLNLDNVTQLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021861THO_THOC1