Gvermi13633.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13633.t1
Unique NameGvermi13633.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6861contigScGOVlb_6861:111..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13633Gvermi13633Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6861 111..602 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1.stop1Gvermi13633.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6861 111..113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1.CDS1Gvermi13633.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6861 111..602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1.exon1Gvermi13633.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6861 111..602 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1.start1Gvermi13633.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_6861 600..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13633.t1Gvermi13633.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6861 111..602 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=164bp
MKFRVLALLDKDEGNRLKHFVQALLQRERVWLRWKRSNYSHLETGVVKSP
TLFKKRTVLWHQKNKKGGFNSWLQRIESLETTPENGDLCSALWDRSPVPG
VKELRQALQEDQDDPDVDEGSKRKNDEKFKWRALRALMDEDVGVLRQLSH
STRLNLDNVTQLG*
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spliced messenger RNA

>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_6861:111..602- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTCGTGTGTTGGCTTTACTGGACAAGGACGAGGGCAATCGACT
GAAGCATTTTGTGCAGGCTCTGCTTCAGAGAGAACGAGTGTGGCTGCGGT
GGAAGCGGAGCAACTACTCGCATCTGGAGACGGGAGTGGTGAAATCACCG
ACGTTGTTCAAGAAACGCACGGTATTATGGCATCAGAAGAACAAAAAGGG
TGGCTTCAACAGTTGGCTCCAGCGAATCGAGTCATTAGAAACAACTCCGG
AAAATGGGGACTTGTGCAGTGCGTTGTGGGACAGATCACCGGTACCTGGG
GTGAAGGAGCTTCGGCAAGCGCTCCAGGAGGACCAGGATGACCCAGACGT
GGACGAAGGATCAAAGAGGAAGAATGACGAAAAATTCAAATGGAGAGCGC
TGCGGGCACTCATGGACGAGGACGTTGGCGTGCTGAGGCAGCTGTCACAC
TCAACCAGACTCAACTTGGATAATGTGACTCAACTTGGATAA
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protein sequence of Gvermi13633.t1

>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MKFRVLALLDKDEGNRLKHFVQALLQRERVWLRWKRSNYSHLETGVVKSP
TLFKKRTVLWHQKNKKGGFNSWLQRIESLETTPENGDLCSALWDRSPVPG
VKELRQALQEDQDDPDVDEGSKRKNDEKFKWRALRALMDEDVGVLRQLSH
STRLNLDNVTQLG*
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mRNA from alignment at ScGOVlb_6861:111..602-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_6861:111..602- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTTCGTGTGTTGGCTTTACTGGACAAGGACGAGGGCAATCGACT
GAAGCATTTTGTGCAGGCTCTGCTTCAGAGAGAACGAGTGTGGCTGCGGT
GGAAGCGGAGCAACTACTCGCATCTGGAGACGGGAGTGGTGAAATCACCG
ACGTTGTTCAAGAAACGCACGGTATTATGGCATCAGAAGAACAAAAAGGG
TGGCTTCAACAGTTGGCTCCAGCGAATCGAGTCATTAGAAACAACTCCGG
AAAATGGGGACTTGTGCAGTGCGTTGTGGGACAGATCACCGGTACCTGGG
GTGAAGGAGCTTCGGCAAGCGCTCCAGGAGGACCAGGATGACCCAGACGT
GGACGAAGGATCAAAGAGGAAGAATGACGAAAAATTCAAATGGAGAGCGC
TGCGGGCACTCATGGACGAGGACGTTGGCGTGCTGAGGCAGCTGTCACAC
TCAACCAGACTCAACTTGGATAATGTGACTCAACTTGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_6861:111..602-

>Gvermi13633.t1 ID=Gvermi13633.t1|Name=Gvermi13633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=492bp|location=Sequence derived from alignment at ScGOVlb_6861:111..602- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTTCGTGTGTTGGCTTTACTGGACAAGGACGAGGGCAATCGACT
GAAGCATTTTGTGCAGGCTCTGCTTCAGAGAGAACGAGTGTGGCTGCGGT
GGAAGCGGAGCAACTACTCGCATCTGGAGACGGGAGTGGTGAAATCACCG
ACGTTGTTCAAGAAACGCACGGTATTATGGCATCAGAAGAACAAAAAGGG
TGGCTTCAACAGTTGGCTCCAGCGAATCGAGTCATTAGAAACAACTCCGG
AAAATGGGGACTTGTGCAGTGCGTTGTGGGACAGATCACCGGTACCTGGG
GTGAAGGAGCTTCGGCAAGCGCTCCAGGAGGACCAGGATGACCCAGACGT
GGACGAAGGATCAAAGAGGAAGAATGACGAAAAATTCAAATGGAGAGCGC
TGCGGGCACTCATGGACGAGGACGTTGGCGTGCTGAGGCAGCTGTCACAC
TCAACCAGACTCAACTTGGATAATGTGACTCAACTTGGATAA
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