Gvermi12880.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12880.t2
Unique NameGvermi12880.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length878
Homology
BLAST of Gvermi12880.t2 vs. uniprot
Match: A0A2V3J1N2_9FLOR (Protein aardvark n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1N2_9FLOR)

HSP 1 Score: 675 bits (1742), Expect = 2.130e-232
Identity = 451/610 (73.93%), Postives = 500/610 (81.97%), Query Frame = 0
Query:  269 MGVPTALRFDNLDATDNTTALPANSS-GKPPLPPPKAIHRQRSKPVPYQAHLPSERKDDAPTSVLEAAAPMDSSSSEVYNSISERGERVAAAFERLGKQTDEFPDTPSELTGGLSPKEVIIPLIVEAMHQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRTAGGIQVLVSSLKRNVHSLKVAEVGMSLTRVVAEDDRNKELFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECTSASPDGACYFLKALCNATFDSLASKTFAGRCGAVEATLRIMSDSSYREVGRVVEDACRLLRSLLDGVSQNQRNMLKHRGVAVVLDAARTHGEALAGVAEHSVAIFVNMVTIRGFVSQLQEGSGDVSQLARRLRKAHEGNPRVEAQVISFVRTLERDERSVASTGSADIRDWRTKSSIERALRPVRSLHKGRHADDDHETRLQRLRSMPLPMVRNRN 877
            M VPTALRFD++D+       P N+S GKPPLPP + IHR R++  P      S  + +   S  +A+ P+D+S SE Y SISERGERVAAAFERLGKQT E+ D+PS+L GGLSPKEVIIPLIVEAM QHRSDPKVADRALTILRRLTVSENCR+CIGENGGIEAVVEIMR+HSLR+GIQTQGCLTLANLAFRNR NKEAVMKC XXXXXXXXXXXXXXXXXXXXXXXXXXXX TNRSDAGEQETSVASGAVE                                   RLRTAGGI+VLVS+L++NV S K++EVGMSLTRVV EDDRNKELF  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +ECT+ASPDG CYFLKALCNATFDS+ASK FAGR GA+EATLRIMS+ +Y+EVGRVVEDACRLLR+LLDGV QNQRN+LKHRG+AVVLD AR HGEALAGVAEHSVAIFV+M   RGF SQ+QEGSGD++QLARRLRKAHEGNPRVE QV + +R LE DERSVAS GS+D+RDW  KSS+ERALRPVRSLH+GR + D+ E RLQRLRSMPLP+ RNR+
Sbjct:    1 MTVPTALRFDDIDSPSAIPPAPPNTSHGKPPLPPARNIHRPRTRASPPLRTTQSPERQEDVASSRDASPPIDTSLSEEYASISERGERVAAAFERLGKQTYEYQDSPSDLAGGLSPKEVIIPLIVEAMRQHRSDPKVADRALTILRRLTVSENCRKCIGENGGIEAVVEIMRSHSLRAGIQTQGCLTLANLAFRNRTNKEAVMKCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNRSDAGEQETSVASGAVEVLLTALERYICSETVQSNALIALTNIASRSPYGMERLRTAGGIEVLVSTLQQNVRSEKLSEVGMSLTRVVVEDDRNKELFGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVNIMNECTTASPDGVCYFLKALCNATFDSMASKIFAGRSGAIEATLRIMSEEAYKEVGRVVEDACRLLRNLLDGVVQNQRNLLKHRGIAVVLDVARVHGEALAGVAEHSVAIFVSMAANRGFASQVQEGSGDINQLARRLRKAHEGNPRVETQVNTLIRALEHDERSVASLGSSDLRDWSNKSSLERALRPVRSLHRGR-SGDEQEKRLQRLRSMPLPLGRNRS 609          
BLAST of Gvermi12880.t2 vs. uniprot
Match: R7QFR9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR9_CHOCR)

HSP 1 Score: 318 bits (816), Expect = 4.810e-94
Identity = 237/550 (43.09%), Postives = 308/550 (56.00%), Query Frame = 0
Query:  334 AAAPMDSSSSEVYNSISERGERVAAAFERLGKQTDEFPDTPSE--LTGGLSPKEVIIPLIVEAMHQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRTAGGIQVLVSSLKRNVHSLKVAEVGMSLTRVVAEDDRNKELFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECTSASPDGACYFLKALCNATFDSLASKTFAGRCGAVEATLRIMSDSSYREVGRVVEDACRLLRSLLDGVSQNQRNMLKHRGVAVVLDAARTHGEALAGVAEHSVAIFVNMVTIRGFVSQLQEGSGDVSQLARRLRKAHEGNPRVEAQVISFVRTLER--DERSVASTGSADIRD-----WR---TKSSIERALRPVRSLHKGRHADDDHETRLQRLRSMPLP 871
            A   +DSS  E Y S ++R ER+A A ER+ K    F  +  E       SPK  +IPLIV+A+ QH  DPKVAD+ LT LRRLTV   CRR IGE GG+EA+VE+MRAHSLR  IQTQ CL LANLA++   NK A M  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTN +  GEQ+ SV +GAVE                                   RLR+AGG+Q +++S+  N+ S +++E+ +S  +V+ E++ N+++F                                                         +  S+  + A   LKAL N+T+DSLA+KT AGR GAVEA L ++S  +++    VVEDACR+LR+L DGV  N R +++  GV  VL+AAR HG + AGVAEH VAIFVN+   +    QL+EG  D + +AR L+ AH GN RV  QV   +  LE   D+    ST S + R+     WR   T+ S E +LR  +SL K    + +  TRLQRLRS+PLP
Sbjct:   84 AGYALDSSPLEHYESKTQRSERIATALERIAKNAAFFGLSAEENACPSDTSPKTAVIPLIVDAITQHVRDPKVADQGLTTLRRLTVDPVCRRTIGECGGVEAIVEVMRAHSLRVRIQTQACLALANLAYKCPENKRAFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNGAIEGEQDASVTAGAVEVLVTALEQYPKSNVVQQQCMIALTNIAAASPLGMERLRSAGGVQAVIASMHNNIRSSQLSEIALSCAKVLVEEESNQKIFGHDGGIEAITMVLDEHRGHTAIAVRGCAAFRQLAFQRENRDLLGRCGSIRAIITAMMDTASSKAETAAVLLKALSNSTYDSLANKTLAGRLGAVEAALHLISPDTFQSNTGVVEDACRVLRNLADGVQLNHRLLIEKGGVVAVLEAAREHGTSSAGVAEHCVAIFVNLSANQSLAEQLKEGGKDFAAMARELQLAHPGNDRVYKQVADLLSILEPKVDDGEPVSTESVEWRESKSCTWRETATQISFEESLRSSKSLRKTFSKEGEQLTRLQRLRSLPLP 633          
The following BLAST results are available for this feature:
BLAST of Gvermi12880.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1N2_9FLOR2.130e-23273.93Protein aardvark n=1 Tax=Gracilariopsis chorda Tax... [more]
R7QFR9_CHOCR4.810e-9443.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 462..504
e-value: 130.0
score: 4.5
coord: 418..460
e-value: 8.4
score: 13.8
coord: 637..680
e-value: 330.0
score: 1.5
coord: 506..549
e-value: 0.87
score: 18.6
coord: 681..726
e-value: 280.0
score: 2.1
coord: 594..636
e-value: 150.0
score: 4.2
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 429..474
score: 10.2724
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 518..562
score: 9.1524
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 381..511
e-value: 6.4E-18
score: 66.3
coord: 512..865
e-value: 3.7E-30
score: 106.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..190
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 561..638
coord: 384..552
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 386..708

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1890011..1892644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12880.t2Gvermi12880.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1890011..1892644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12880.t2 ID=Gvermi12880.t2|Name=Gvermi12880.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=878bp
LFSARKEHVDPPDARRTQFPSSSHAPPLDHRPPLSRGPQNSPPTVLNVRS
EPSHRLKSLINAARSVADNDDDSARSADPSLAGSSRTSIPVSPVTGTSQS
HSTVGSVAPWDRKEHHSSSPVPSPPGPLSVRFDVDRIKPSDHLLSQAHPS
APSPPTPTDPISHSESLATHAFDDSQIQSPTLTPQSPELHKHSTHPAENL
QSRLSSDSDSDSDSDSDQSLPSAHSEISSPNVKYPSPTTISQPQSYNQPP
AHRSFPLRLPPRARTPNSMGVPTALRFDNLDATDNTTALPANSSGKPPLP
PPKAIHRQRSKPVPYQAHLPSERKDDAPTSVLEAAAPMDSSSSEVYNSIS
ERGERVAAAFERLGKQTDEFPDTPSELTGGLSPKEVIIPLIVEAMHQHRS
DPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQ
GCLTLANLAFRNRNNKEAVMKCSGLKVVVAALSAHPNVEQIQAWGCLAIR
NFTNRSDAGEQETSVASGAVEVLLSALERYSSSETVQNNALIALTNIASR
SPYGMERLRTAGGIQVLVSSLKRNVHSLKVAEVGMSLTRVVAEDDRNKEL
FGQSDGIQAMTAVMDTHRGHIAINVKGCAAVRHLAFRRKNREIMGSCGII
RTIVCVMDECTSASPDGACYFLKALCNATFDSLASKTFAGRCGAVEATLR
IMSDSSYREVGRVVEDACRLLRSLLDGVSQNQRNMLKHRGVAVVLDAART
HGEALAGVAEHSVAIFVNMVTIRGFVSQLQEGSGDVSQLARRLRKAHEGN
PRVEAQVISFVRTLERDERSVASTGSADIRDWRTKSSIERALRPVRSLHK
GRHADDDHETRLQRLRSMPLPMVRNRN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold