Gvermi12855.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12855.t1
Unique NameGvermi12855.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Homology
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BLAST of Gvermi12855.t1 vs. uniprot
Match: A0A2V3J053_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J053_9FLOR)

HSP 1 Score: 197 bits (502), Expect = 2.630e-53
Identity = 384/499 (76.95%), Postives = 416/499 (83.37%), Query Frame = 0 
Query:    1 MTCVPFVPTPNDNSDIPPLPVLAQLELRAGDPAAAARLLSRHLSETPTDARSWIEYAKAARKAHGHKHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRAVRKSKAAPLYTAYAGHEAKRGKFQRARFLYMRAAEADPKDKLVWHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNVTESRRLFREAADRVGEGKAAMLYMNXXXXXXXXXXXXXXXXXXMQGMNSRKENSQDVIRLVHVWAGVERKEGNVTKARELYNRALRINSRDYKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLEWKHFAEDGGVERARKLFAETTRRRGRHASLLRVWAALEEDQGDSDKAERLRILANKR 499
            MTCVP  PTP+DNSDIP LP LAQLELRAGD AAAARLLS+H+++ P DARSW+ Y KA R AHG K AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+ V+ +  A LYTAYAG EA RG  QRARFLYMRAA  DPKDKLVWH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           EAA R+G+  +A+L+  XXXXXXXXXXXXXXXXXX +G++ R E   DV+RL+H                     ALR+N+RDY+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LA+LEWKHF  DGGV+RAR+LF+ T+R++   ASLLRVWA+LEEDQGDS  AERLR LAN++
Sbjct:   42 MTCVPITPTPHDNSDIPALPTLAQLELRAGDFAAAARLLSKHVAQQPYDARSWLAYGKAVRTAHGPKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGVKRVQTASTAALYTAYAGLEANRGNAQRARFLYMRAAGVDPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAAQRLGKRNSALLFSXXXXXXXXXXXXXXXXXXXQRGVSGRSERRDDVVRLIHXXXXXXXXXXXXXXXXXXXXXALRVNARDYRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAILEWKHFGHDGGVDRARELFSRTSRQKRHDASLLRVWASLEEDQGDSGLAERLRSLANRK 540
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BLAST of Gvermi12855.t1 vs. uniprot
Match: R7QHJ0_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ0_CHOCR)

HSP 1 Score: 125 bits (314), Expect = 2.220e-27
Identity = 309/478 (64.64%), Postives = 348/478 (72.80%), Query Frame = 0 
Query:   23 AQLELRAGDPAAAARLLSRHLSETPTDARSWIEYAKAARKAHGHKHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRAVRKSKAAPLYTAYAGHEAKRGKFQRARFLYMRAAEADPKDKLVWHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNVTESRRLFREAADRVGE-GKAAMLYMNXXXXXXXXXXXXXXXXXXMQGMNSRKENSQDVIRLVHVWAGVERKEGNVTKARELYNRALRINSRDYKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLEWKHFAEDGGVERARKLFAETTRRRGRHASLLRVWAALEEDQGDSDKAERLRILANKR 499
            A LELRAGD AAAARL  +HL+  P DAR W+++AKA R+A     A                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+ V K +A  LY  YA   A      +ARFLYMR AEADPKDKL+W A             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           EA +R+G+  +AA++++ XXXXXXXXXXXXXXXXXX  G   ++E  QD++RL+H WAG+ERKEG   +AR LY RAL +N RD++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E KHFAE+GGV RAR+LF  T+++  + AS++R WA  EE QGD++ A RLR +A KR
Sbjct:   35 AHLELRAGDVAAAARLFDQHLTLRPDDARVWLDWAKAERRADPAA-AAAILQRAVATVPRDPYLWHFRAACVTAANGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGVKNVPKIRAVVLYAGYAQLAANGRMPDKARFLYMRGAEADPKDKLIWQAWACLEEREGNVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGERIGQDARAAVMFLGXXXXXXXXXXXXXXXXXXRAGSIRKRERPQDLVRLLHSWAGLERKEGEAEEARRLYRRALDLNERDHRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAKHFAEEGGVGRARELFLRTSKQMRKPASVIRAWAGFEEQQGDAELATRLRCVAEKR 511
The following BLAST results are available for this feature:
BLAST of Gvermi12855.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J053_9FLOR2.630e-5376.95PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QHJ0_CHOCR2.220e-2764.64TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 378..410
e-value: 48.0
score: 10.4
coord: 202..234
e-value: 0.23
score: 20.5
coord: 236..268
e-value: 0.011
score: 25.0
coord: 64..96
e-value: 650.0
score: 2.1
coord: 450..482
e-value: 370.0
score: 3.9
coord: 30..62
e-value: 29.0
score: 12.0
coord: 98..130
e-value: 5.9
score: 15.9
coord: 270..302
e-value: 0.64
score: 19.1
coord: 166..200
e-value: 75.0
score: 9.0
coord: 132..164
e-value: 0.2
score: 20.8
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 84..117
e-value: 240.0
score: 2.8
coord: 188..221
e-value: 430.0
score: 0.6
coord: 222..255
e-value: 130.0
score: 5.1
coord: 118..151
e-value: 30.0
score: 10.8
coord: 256..289
e-value: 300.0
score: 2.0
coord: 364..397
e-value: 75.0
score: 7.3
coord: 152..185
e-value: 380.0
score: 1.1
coord: 326..359
e-value: 430.0
score: 0.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 151..442
e-value: 1.1E-38
score: 135.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 21..150
e-value: 7.2E-22
score: 79.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 22..184
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 361..492
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 154..360
NoneNo IPR availablePFAMPF13432TPR_16coord: 295..349
e-value: 0.014
score: 16.0
coord: 102..152
e-value: 0.01
score: 16.4
NoneNo IPR availablePFAMPF13428TPR_14coord: 22..58
e-value: 7.9E-6
score: 26.2
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 450..496
coord: 326..442
coord: 22..181
coord: 155..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1814279..1815781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1Gvermi12855.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1814279..1815781 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MTCVPFVPTPNDNSDIPPLPVLAQLELRAGDPAAAARLLSRHLSETPTDA
RSWIEYAKAARKAHGHKHAAQILQRAVGHVQNDAYVWHFYASCEAAASGK
SSARKVYKRALENCPDNAVLLSALAALESSVSNFATAAKLFQRAIEADIQ
DPYIYMQWANMELRRRNFSKASSVFEMGVRAVRKSKAAPLYTAYAGHEAK
RGKFQRARFLYMRAAEADPKDKLVWHAWASLEHRTGNNERARQLFERAIV
ADPSFPCSWQAWGLLEEREQKFNAARCLYERGTRADPHDPLNWQAWALLE
ARTGNVTESRRLFREAADRVGEGKAAMLYMNWALLEANVGDTESARTLFM
QGMNSRKENSQDVIRLVHVWAGVERKEGNVTKARELYNRALRINSRDYKV
LHAFSSLEQDDGNYEASRELLKKSVRFSSGDLMAIRSLAMLEWKHFAEDG
GVERARKLFAETTRRRGRHASLLRVWAALEEDQGDSDKAERLRILANKRQ
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like